Automated Segmentation

Automated segmentation is a computational technique that divides images or other complex data into meaningful regions, enabling consistent identification of structures that might be difficult to delineate manually. In bioengineering, algorithms analyze features such as intensity, texture, shape, or spatial context and assign pixels or voxels to defined categories using approaches including thresholding, clustering, or machine-learning models. The resulting masks support quantitative measurements of cells, tissues, organs, biomaterials, and engineered constructs. By reducing manual workload and improving reproducibility, automated segmentation strengthens image-based analysis, accelerates experiments, and supports applications such as disease characterization, tissue engineering, and biomedical device evaluation.

Automated Segmentation - Related Videos

Research

JoVE Journal - Biology
Free Sample

Automated Joint Space Detection Improves Bone Segmentation Accuracy

0 Views •

2025

The development of an automated joint space detection workflow enabled high-throughput segmentation of distinct murine hindpaw bones with >98% accuracy in wild-type animals. Flexible application to forepaws and paws with inflammatory-erosive arthritis was achieved, but with deprecated performance that warrants further optimization in future studies using publicly available data.

Research

JoVE Journal - Biology

SCAnED - An Open-source Skin Segmentation Macro for Semi-automated Cell and Nuclei Detection in Epidermal and Dermal Skin Compartments

0 Views •

2025

Here, we present a semi-automated protocol for identifying and quantifying immune and non-immune cells in skin sections using SCAnED, a free ImageJ-based macro for skin segmentation.

Automated Segmentation of Cortical Grey Matter from T1-Weighted MRI Images

0 Views •

2019

This protocol describes the process of applying seven different automated segmentation tools to structural T1-weighted MRI scans to delineate grey matter regions that can be used for the quantification of grey matter volume.

Automated Slide Scanning and Segmentation in Fluorescently-labeled Tissues Using a Widefield High-content Analysis System

0 Views •

Cited by 2 •

2018

Here we describe a protocol for the automated segmentation of fluorescently labeled tissues on slides using a widefield high-content analysis system (WHCAS). This protocol has wide-ranging applications in any field which involves the quantitation of fluorescent markers in biological tissues including the biological sciences, medical engineering, and health sciences.

From Voxels to Knowledge: A Practical Guide to the Segmentation of Complex Electron Microscopy 3D-Data

0 Views •

Cited by 14 •

2014

The bottleneck for cellular 3D electron microscopy is feature extraction (segmentation) in highly complex 3D density maps. We have developed a set of criteria, which provides guidance regarding which segmentation approach (manual, semi-automated, or automated) is best suited for different data types, thus providing a starting point for effective segmentation.

View All Results

FAQs

Related Topics