Brain Slice Injury

Brain slice injury is an ex vivo neuroscience model that reproduces localized damage in thin sections of brain tissue to study cellular and molecular responses to trauma. Preparing slices with a blade or vibratome disrupts neural circuits, damages cells near the cut surface, and initiates processes such as membrane injury, inflammation, and tissue repair under controlled laboratory conditions. Researchers use this model to examine neuronal and glial responses, test potential neuroprotective treatments, and investigate mechanisms of brain injury without the complexity of a whole-animal experiment. Its accessibility and experimental control support mechanistic studies of neurodegeneration, recovery, and therapeutic development.

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JoVE EoE - Neuropathology

Inducing Traumatic Injury in a Brain Slice Using a Shock Tube Device

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2025

In this video, a shock tube device is used to generate a shockwave by rupturing a polymer diaphragm through controlled pressurization. The shockwave impacts brain slices contained in a secured bag, inducing traumatic injury to the brain slice.

TTC Staining of Rat Brain Tissue Slices: A Staining Procedure to Differentiate Viable and Necrotic Tissue in Tissue Slices After Ischemia-Reperfusion Injury

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2025

This video describes the 2,3,5-triphenyl-2H-tetrazolium chloride staining procedure to visualize rat brain tissue slices and differentiate viable and damaged tissue following middle cerebral artery occlusion and reperfusion.

A Mouse Model of Single and Repetitive Mild Traumatic Brain Injury

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Cited by 16 •

2017

Athletes absorb several hundred mild traumatic brain injuries (mTBI)/concussions every year; however, the consequence of these on the brain is poorly understood. Therefore, an animal model of single and repetitive mTBI that consistently replicates clinically relevant symptoms provides the means to advance the study of mTBI and concussion.

The Organotypic Hippocampal Slice Culture Model for Examining Neuronal Injury

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Cited by 9 •

2010

The organoptypic hippocampal slice culture model is an in vitro model used to examine neuronal injury in a variety of paradigms. In this article, we describe the methods for generating slice cultures and quantifying neuronal injury.

Ex Vivo Optogenetic Dissection of Fear Circuits in Brain Slices

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Cited by 8 •

2016

Optogenetic approaches are widely used to manipulate neural activity and assess the consequences for brain function. Here, a technique is outlined that upon in vivo expression of the optical activator Channelrhodopsin, allows for ex vivo analysis of synaptic properties of specific long range and local neural connections in fear-related circuits.

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