Question 1

What types of molecules can be covalently linked to proteins as regulators?

Accepted Answer

Covalently linked protein regulators include functional groups such as phosphate, methyl, and acetyl moieties, as well as small proteins like ubiquitin. Approximately 200 different types of covalent regulators have been identified. These molecules attach to specific amino acids within the polypeptide chain, enabling precise control of protein function and cellular localization.

Question 2

Which amino acids can be modified by phosphate groups, and which by acetyl groups?

Accepted Answer

Phosphate groups attach exclusively to serine, threonine, or tyrosine residues. Methyl and acetyl groups link only to lysine amino acids. These site-specific attachments are catalyzed by enzymes; for example, acetyltransferases add acetyl groups while deacetylases remove them, allowing reversible regulation of protein function.

Question 3

How do acetylation and methylation of histone proteins affect gene expression?

Accepted Answer

Acetylation of histone proteins opens up DNA structure, activating gene transcription. Methylation, conversely, tightens the DNA structure and represses transcription. These opposing modifications demonstrate how covalent regulators can produce distinct functional outcomes depending on the type of modification applied to the same protein target.

Question 4

What happens when a single ubiquitin versus multiple ubiquitins attach to a cell surface receptor?

Accepted Answer

A single ubiquitin molecule covalently linked to a cell surface receptor targets the protein for endocytosis. Multiple ubiquitins linked together and attached to the same receptor mark it for proteolytic degradation. The number and arrangement of ubiquitin molecules determine whether the protein is internalized or destroyed.

Question 5

How does phosphorylation of p53 respond to DNA damage?

Accepted Answer

Exposure to DNA-damaging agents such as UV and gamma radiation triggers phosphorylation of p53 at specific serine residues. This phosphorylation improves p53 stability and activates it, enabling the protein to bind damaged DNA and prevent cells with mutated DNA from dividing uncontrollably, protecting against cancer development.

Question 6

Why can a single protein like p53 undergo multiple different covalent modifications simultaneously?

Accepted Answer

Multiple simultaneous modifications on a single protein allow precise control of distinct functions. p53 undergoes phosphorylation, acetylation, and sumoylation in response to different stressors like radiation and carcinogens. The combination and location of modifications vary by stressor type and cell context, enabling p53 to coordinate cell cycle arrest, DNA repair, and apoptosis.

Question 7

How do different types of cellular stress produce different modification patterns on p53?

Accepted Answer

UV and gamma radiation phosphorylate serine 33, but only UV radiation phosphorylates serine 392. Other stressors like hypoxia, anti-metabolites, and actinomycin D trigger acetylation instead. Modification sites and types vary by stressor, cell type, and organism, allowing p53 to mount stress-specific responses tailored to the threat.

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