Organoid Embedding

Organoid embedding is the process of placing three-dimensional, self-organizing cell cultures within a supportive extracellular matrix to maintain their structure and growth in vitro. Typically, organoids are suspended in a basement membrane extract or defined hydrogel, where the matrix provides physical support, biochemical cues, and a diffusion environment for nutrients and signaling molecules. In cancer research, embedding enables tumor organoids to model tissue architecture, disease-specific behavior, invasion, and responses to anticancer drugs. Standardized embedding methods improve organoid viability and reproducibility, supporting patient-derived models, treatment screening, and investigation of tumor biology.

Organoid Embedding - Related Videos

Research

JoVE EoE - Colorectal Cancer

CRC Organoid Culture: A Method to Obtain 3D Organoids from Colorectal Cancer Cells

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2023

This video describes the detailed protocol for generating 3D organoids from murine-model derived colorectal cancer cells by propagating them on artificial extracellular matrix coated plates. These CRC organoids can be used as a model to study the primary growth of human tumor cells and metastasis.

An In Vitro Method to Generate Human Brain Organoids

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2025

The video demonstrates a method for generating human brain organoids from induced pluripotent stem cells. It shows how the neurosphere forms a neuroectodermal layer, which suppresses the formation of other germ layers. The neurospheres are embedded in a 3D gel matrix and form neuroepithelial buds. When incubated with organoid media, these neuroepithelial buds differentiate into specific brain regions, resulting in the formation of mature brain organoids.

Processing of Lentivirus-Transduced Mouse Intestinal Organoids for Immunohistochemical Analysis

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2026

Source: Van Lidth de Jeude, J. F., et al. A Protocol for Lentiviral Transduction and Downstream Analysis of Intestinal Organoids. J. Vis. Exp. (2015).This video demonstrates the processing of lentivirus-transduced mouse intestinal organoids for paraffin embedding, to enable their downstream analysis for assessing gene expression.

A Protocol for Lentiviral Transduction and Downstream Analysis of Intestinal Organoids

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Cited by 81 •

2015

In this video protocol we give a step by step explanation of lentiviral transduction in organoids of primary intestinal epithelium and of processing and downstream analysis of these cultures by quantitative RT-PCR, RNA-microarray and immunohistochemistry.

Organoid Electroporation: A Method to Transfect Plasmid DNA into Gastrointestinal Organoids

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2023

This video describes the electroporation protocol for transfecting large plasmids into three-dimensional gastrointestinal organoids to prove its universal functionality in different entities, namely pancreatic ductal adenocarcinoma (PDAC), colorectal cancer (CRC), cholangiocarcinoma (CCC), and gastric cancer (GC) organoids.

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