Small Activating Rna

Small activating RNA (saRNA) is a short double-stranded RNA molecule that increases expression of a selected gene, offering a way to regulate cellular function at the transcriptional level. After entering cells, saRNA can associate with Argonaute proteins and guide regulatory complexes to complementary promoter or enhancer regions, where they may alter chromatin structure and recruit transcriptional machinery. In medicine, this gene-activation approach is being investigated to restore expression of protective or deficient proteins, including targets relevant to cancer, cardiovascular disease, and tissue repair. Its potential for sequence-specific, endogenous gene regulation makes saRNA a candidate for research in therapeutics and regenerative medicine.

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Research

JoVE EoE - Biomolecular Interaction Detection Techniques

Helicase Activity Measurement of a Target Protein Using Biotin-Labeled RNA Duplexes

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2025

In this video, we demonstrate the procedure to determine the helicase activity of a target protein to unwind the biotin-labeled dsRNA substrate. The activity of the enzyme was identified by analyzing the electrophoretic mobility shift, followed by a chemiluminescence assay using chemiluminescent enzyme-conjugated streptavidin.

Antibody-Free Assay for RNA Methyltransferase Activity Analysis

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2019

Here, an antibody-free in vitro assay for direct analysis of methyltransferase activity on synthetic or in vitro transcribed RNA is described.

Studying RNA Interactors of Protein Kinase RNA-Activated during the Mammalian Cell Cycle

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Cited by 1 •

2019

We present experimental approaches for studying RNA-interactors of double-stranded RNA binding protein kinase RNA-activated (PKR) during the mammalian cell cycle using HeLa cells. This method utilizes formaldehyde to crosslink RNA-PKR complexes and immunoprecipitation to enrich PKR-bound RNAs. These RNAs can be further analyzed through high-throughput sequencing or qRT-PCR.

Education

JoVE Core - Biology

RNA Stability

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2019

Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...

Eukaryotic RNA Polymerases

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2025

RNA Polymerase (RNAP) is conserved in all animals, with bacterial, archaeal, and eukaryotic RNAPs sharing significant sequence, structural, and functional similarities. Among the three eukaryotic RNAPs, RNA Polymerase II is most similar to bacterial RNAP in terms of both structural organization and folding topologies of the enzyme subunits. However, these similarities are not reflected in their mechanism of action. All three eukaryotic RNAPs require specific transcription factors, of which the...

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