In-situ Structure Localization

In-situ structure localization is the determination of a molecule, material, or reactive intermediate’s structure and position within the chemical environment where it exists. Rather than isolating and potentially altering the species, researchers monitor characteristic structural signals directly during formation, transformation, or operation, often under controlled reaction conditions. Spectroscopic, diffraction, and spatially resolved analytical measurements can link chemical identity with location and time, revealing changes that conventional ex-situ analysis may miss. In chemistry, this approach supports mechanistic studies, catalyst characterization, reaction monitoring, and the investigation of heterogeneous materials, helping connect molecular structure to chemical function.

In-situ Structure Localization - Related Videos

Research

JoVE Journal - Biology
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In Situ Hybridization for the Precise Localization of Transcripts in Plants

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Cited by 68 •

2011

The in situ hybridization protocol described here allows a direct localization of mRNA and small RNA expression at the cellular level with high sensitivity and specificity. The procedure is optimized for paraffin-embedded plant tissue sections, is applicable to a wide range of plants and tissues, and can be completed within ten days.

Research

JoVE Journal - Neuroscience

Localization of Odorant Receptor Genes in Locust Antennae by RNA In Situ Hybridization

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Cited by 5 •

2017

This paper describes a detailed and highly effective RNA in situ hybridization protocol particularly for low-level expressed Odorant Receptor (OR) genes, as well as other genes, in insect antennae using digoxigenin (DIG)-labeled or biotin-labeled probes.

Methods of Ex Situ and In Situ Investigations of Structural Transformations: The Case of Crystallization of Metallic Glasses

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2018

Here, we present a protocol to describe ex situ and in situ investigations of structural transformations in metallic glasses. We employed nuclear-based analytical methods which inspect hyperfine interactions. We demonstrate the applicability of Mössbauer spectrometry and nuclear forward scattering of synchrotron radiation during temperature-driven experiments.

Detection of Axonally Localized mRNAs in Brain Sections Using High-Resolution In Situ Hybridization

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Cited by 8 •

2015

RNA in situ hybridization (ISH) enables the visualization of RNAs in cells and tissues. Here we show how combination of RNAscope ISH with immunohistochemistry or histological dyes can be successfully used to detect mRNAs localized to axons in sections of mouse and human brains.

Education

JoVE Core - Pharmacology

Local Anesthetics: Chemistry and Structure-Activity Relationship

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2025

Local anesthetics (LAs) are drugs that induce a temporary loss of sensation in a limited body area, preventing pain. Cocaine was the first local anesthetic discovered in the late 19th century. Cocaine is a benzoic acid ester obtained from the leaves of coca shrubs and was often used for its psychotropic effects. Cocaine was first isolated in 1860 by Albert Niemann. Sigmund Freud studied the physiological actions of cocaine. Carl Koller later introduced it into clinical practice in 1884 as a...

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