Viral Polymerase Inhibition

Viral polymerase inhibition is an antiviral strategy that blocks viral enzymes responsible for copying genetic material, thereby limiting replication and disease progression. Inhibition occurs when a drug binds the polymerase or is incorporated into a growing viral nucleic acid strand, causing premature termination or reducing the enzyme’s ability to synthesize accurate copies. This approach can target RNA- or DNA-dependent polymerases in viruses and forms the basis of several antiviral therapies. Studying polymerase structure, catalytic activity, substrate recognition, and resistance mutations helps researchers design selective inhibitors and evaluate their potential for treating viral infections.

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Research

JoVE EoE - Viral Growth and Techniques

Measuring Hepatitis C Viral Load Using Quantitative Reverse Transcription Polymerase Chain Reaction

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2026

Source: Ren, S., et al. A Protocol for Analyzing Hepatitis C Virus Replication. J. Vis. Exp. (2014).This video demonstrates the procedure for quantifying Hepatitis C viral RNA using quantitative reverse transcription PCR to measure viral load in infected cell cultures.

Obtaining Viral RNA for Real-Time Quantitative Polymerase Chain Reaction (qPCR) Analysis

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2026

Source: Suzuki, Y., et al. Measuring Dengue Virus RNA in the Culture Supernatant of Infected Cells by Real-time Quantitative Polymerase Chain Reaction. J. Vis. Exp. (2018).This video demonstrates the procedure for preparing viral samples for quantitative PCR (Polymerase chain reaction) analysis. Viral samples and RNA standards are serially diluted, treated with a proteinase K buffer, and incubated under controlled temperatures to release RNA. The processed RNA is then stabilized and stored for...

Education

JoVE Core - Molecular Biology

RNA Polymerase II Accessory Proteins

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2020

Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...

Education

JoVE Core - Molecular Biology
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Translesion DNA Polymerases

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2020

Translesion (TLS) polymerases rescue stalled DNA polymerases at sites of damaged bases by replacing the replicative polymerase and installing a nucleotide across the damaged site. Doing so, TLS allows additional time for the cell to repair the damage before resuming regular DNA replication. TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...

Eukaryotic RNA Polymerases

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2025

RNA Polymerase (RNAP) is conserved in all animals, with bacterial, archaeal, and eukaryotic RNAPs sharing significant sequence, structural, and functional similarities. Among the three eukaryotic RNAPs, RNA Polymerase II is most similar to bacterial RNAP in terms of both structural organization and folding topologies of the enzyme subunits. However, these similarities are not reflected in their mechanism of action. All three eukaryotic RNAPs require specific transcription factors, of which the...

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