Brain Connectome Modeling

Brain connectome modeling is the computational representation and analysis of the brain’s network of interconnected regions, providing a framework for studying how anatomy supports communication and behavior. Models represent brain areas as nodes and their structural or functional connections as edges, using data from techniques such as magnetic resonance imaging alongside graph-theoretical and computational methods to quantify network organization. In neuroscience, connectome models help identify pathways involved in cognition, characterize changes associated with neurological and psychiatric disorders, and relate network architecture to individual differences. They also support simulations of brain dynamics and may improve disease classification, treatment planning, and predictions of neural function.

Brain Connectome Modeling - Related Videos

Research

JoVE Journal - Neuroscience

A Scanning Electron Microscopy-Compatible Optical Imaging Method for Mesoscopic All-Cell Brain Mapping

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2026

We introduced a novel imaging technique called Optical Multilayer Interference Tomography (OMLIT), which enables unbiased imaging of all cells in brain specimens at the mesoscale and can be seamlessly integrated into the imaging workflow of tape-based serial scanning electron microscopy on the same sample.

Improved Method for the Establishment of an In Vitro Blood-Brain Barrier Model Based on Porcine Brain Endothelial Cells

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Cited by 31 •

2017

The aim of the protocol is to present an optimized procedure for the establishment of an in vitro blood-brain barrier (BBB) model based on primary porcine brain endothelial cells (pBECs). The model shows high reproducibility, high tightness, and is suitable for studies of transport and intracellular trafficking in drug discovery.

A Mouse Model of Single and Repetitive Mild Traumatic Brain Injury

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Cited by 16 •

2017

Athletes absorb several hundred mild traumatic brain injuries (mTBI)/concussions every year; however, the consequence of these on the brain is poorly understood. Therefore, an animal model of single and repetitive mTBI that consistently replicates clinically relevant symptoms provides the means to advance the study of mTBI and concussion.

Brain Metastasis Mouse Model: A Method to Generate Brain Metastasis Mouse Model by Intracarotid Cancer Cell Injection

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2025

This video demonstrates the establishment of a brain metastasis mouse model by intracarotid injection of fluorescently labeled cancer cells. The mouse model can be used to study the effects of novel therapeutics and the underlying physiological mechanisms.

Research

JoVE Journal - Neuroscience
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Lateral Fluid Percussion: Model of Traumatic Brain Injury in Mice

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Cited by 125 •

2011

Lateral fluid percussion (LFP), an established model of traumatic brain injury in mice, is demonstrated. LFP fulfills three major criteria for animal models: validity, reliability and clinical relevance. The procedure, consisting of surgical craniotomy, fixation of hub followed by induction of injury, resulting in focal and diffuse injuries, is described.

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