Mouse Intestinal Organoids

Mouse intestinal organoids are three-dimensional, self-organizing cultures derived from mouse intestinal stem cells that reproduce key features of the intestinal epithelium in vitro. Embedded in an extracellular matrix and supplied with defined growth factors, the stem cells proliferate, form crypt-like structures, and differentiate into epithelial lineages such as enterocytes, goblet cells, and Paneth cells. These organoids provide a controlled model for studying intestinal development, stem cell regulation, epithelial renewal, and tissue organization. They also support research on host-pathogen interactions, gastrointestinal disease, drug responses, and regenerative biology while reducing reliance on animal experiments.

Mouse Intestinal Organoids - Related Videos

Research

JoVE Journal - Biology

A Protocol for Lentiviral Transduction and Downstream Analysis of Intestinal Organoids

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Cited by 81 •

2015

In this video protocol we give a step by step explanation of lentiviral transduction in organoids of primary intestinal epithelium and of processing and downstream analysis of these cultures by quantitative RT-PCR, RNA-microarray and immunohistochemistry.

Gene Delivery to Mouse Intestinal Organoids Using Lentiviral Vectors

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2026

Source: Van Lidth de Jeude, J. F., et al. Protocol for Lentiviral Transduction and Downstream Analysis of Intestinal Organoids. J. Vis. Exp. (2015)This video describes the lentiviral transduction of mouse intestinal organoids from a crypt-like structure containing suspension. Using a basement membrane matrix as a scaffold and growth factor–supplemented media, lentiviral vectors are introduced to enable stable gene...

Processing of Lentivirus-Transduced Mouse Intestinal Organoids for Immunohistochemical Analysis

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2026

Source: Van Lidth de Jeude, J. F., et al. A Protocol for Lentiviral Transduction and Downstream Analysis of Intestinal Organoids. J. Vis. Exp. (2015).This video demonstrates the processing of lentivirus-transduced mouse intestinal organoids for paraffin embedding, to enable their downstream analysis for assessing gene expression.

The Ex Vivo Culture and Pattern Recognition Receptor Stimulation of Mouse Intestinal Organoids

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Cited by 4 •

2016

Here, a protocol to harvest, maintain, and treat mouse small intestinal organoids with pathogen associated molecular patterns (PAMPs) and Listeria monocytogenes is described, as well as emphasis on gene expression and proper normalization techniques for protein.

Research

JoVE Journal - Bioengineering
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A Protocol for Multiple Gene Knockout in Mouse Small Intestinal Organoids Using a CRISPR-concatemer

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Cited by 17 •

2017

This protocol describes the steps for cloning multiple single guide RNAs into one guide RNA concatemer vector, which is of particular use in creating multi-gene knockouts using CRISPR/Cas9 technology. The generation of double knockouts in intestinal organoids is shown as a possible application of this method.

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