Dna Nanostructure Self-assembly

DNA nanostructure self-assembly is the organization of designed DNA strands into predictable nanoscale shapes, making DNA a programmable material for chemistry and nanotechnology. It works through selective Watson–Crick base pairing, in which complementary sequences hybridize under suitable ionic and temperature conditions, while junctions, crossover points, and strand lengths guide the final architecture. Chemists use this process to create tiles, cages, origami structures, and responsive devices with controlled geometry and molecular addressability. These assemblies support research in molecular recognition, catalysis, biosensing, and drug delivery, while providing platforms for studying how sequence information can encode complex materials.

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JoVE Journal - Bioengineering

ECM Protein Nanofibers and Nanostructures Engineered Using Surface-initiated Assembly

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Cited by 17 •

2014

A method to obtain nanofibers and complex nanostructures from single or multiple extracellular matrix proteins is described. This method uses protein-surface interactions to create free-standing protein-based materials with tunable composition and architecture for use in a variety of tissue engineering and biotechnology applications.

Self-assembly of Complex Two-dimensional Shapes from Single-stranded DNA Tiles

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Cited by 5 •

2015

DNA tiling is an effective approach to make programmable nanostructures. We describe the protocols to construct complex two-dimensional shapes by the self-assembly of single-stranded DNA tiles.

Protocols for C-Brick DNA Standard Assembly Using Cpf1

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Cited by 4 •

2017

CRISPR-associated protein Cpf1 can be guided by a specially designed CRISPR RNA (crRNA) to cleave double-stranded DNA at desired sites, generating sticky ends. Based on this characteristic, a DNA assembly standard (C-Brick) was established, and a protocol detailing its use is described here.

Synthetic Condensates and Cell-Like Architectures from Amphiphilic DNA Nanostructures

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2024

We present a protocol for preparing synthetic biomolecular condensates consisting of amphiphilic DNA nanostars starting from their constituent DNA oligonucleotides. Condensates are produced from either a single nanostar component or two components and are modified to sustain in vitro transcription of RNA from an embedded DNA template.

Atomically Traceable Nanostructure Fabrication

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Cited by 4 •

2015

We report a protocol for combining the atomic metrology of the Scanning Tunneling Microscope for surface patterning with selective Atomic Layer Deposition and Reactive Ion Etching. Using a robust process involving numerous atmospheric exposures and transport, 3D nanostructures with atomic metrology are fabricated.

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