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Method Article

Generation of Tilted Amygdala Slices from a Mouse Brain

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July 8th, 2025

In This Article

Abstract

Source: Bosch, D., et al. Ex Vivo Optogenetic Dissection of Fear Circuits in Brain Slices. J. Vis. Exp. (2016)

The video demonstrates the generation of tilted amygdala slices from a mouse brain. The brain is positioned at an angle on the vibratome specimen stage to obtain slices containing the amygdala and axons from the medial prefrontal cortex that form synaptic connections with the amygdala. The brain slices are maintained at the physiological temperature to preserve the tissue for further experiments.

Protocol

All procedures involving sample collection have been performed in accordance with the institute's IRB guidelines.

1. Preparation of Acute Slices

  1. Prepare artificial cerebrospinal fluid (ACSF), cutting solution, tools (scissors, scalpel, forceps, spatula, Pasteur pipette), and agar blocks.
    Note: 1 L of artificial cerebrospinal fluid (ACSF) is required per experiment, and is prepared by dissolving chemicals in double-distilled H2O as previously published. The cutting solution is prepared by supplementing 200 ml of ACSF with 0.87 ml of 2 M MgSO4 stock solution.

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Results

Stereotactic virus injection diagram showing viral constructs in brain regions, fiber visualization.
Figure 1. Stereotactic Injections, Preparation of Acute Brain Slices, and Visualization of Presynaptic Fibers. (A, B) Stereotactic virus injection. A) Picture of anesthetized mouse placed in a stereotactic frame with skull exposed and t.......

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Disclosures

No conflicts of interest declared.

Materials

List of materials used in this article
NameCompanyCatalog NumberComments
artificial cerebrospinal fluid (ACSF)
internal patch solutions
Magnesium Sulfate HeptahydrateRoth, GermanyP027.1prepare 2M stock solution in purified water
Slicer, Microm HM650VFisher Scientific, Germany920120
Cooling unit for tissue slicer, CU65Fisher Scientific, Germany770180
Sapphire bladeDelaware Diamond Knivescustom order, inquire with company
Stereoscope, SZX2-RFA16Olympus, Japan
Patch microscope, BX51WIOlympus, Japan
Bath temperature controler, TC05Luigs & Neumann, Germany200-100 500 0145
Cellulose nitrate filterpaper for interface chamberSatorius Stedim Biotech, Germany13006--50 ACN

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Mouse Brain SlicingVibratome SectioningMedial Prefrontal CortexAmygdala ProjectionsBrain Tissue PreparationOxygenated ACSFPhysiological Temperature RecoveryAgar Block AnglingSlice Stabilization