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Method Article

Obtaining Various Neural Cell Populations from a Rat Hippocampus

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July 8th, 2025

In This Article

Abstract

Source: Schwarz, J. M. Using Fluorescence Activated Cell Sorting to Examine Cell-Type-Specific Gene Expression in Rat Brain Tissue. J. Vis. Exp. (2015)

This video demonstrates a protocol to isolate cells from rat hippocampi, including neurons, astrocytes, and microglia.

Protocol

All procedures involving sample collection have been performed in accordance with the institute's IRB guidelines.

1. Tissue Collection

  1. Prepare Buffer X from the Neural Dissociation Kit by adding beta-mercaptoethanol to Buffer X to a final concentration of 0.067 mM (for 4 samples, add 13.5 µl of 50 mM beta-mercaptoethanol to 10 ml of Buffer X).
  2. Prepare Enzyme Mix 1 by mixing 50 µl of Enzyme P with 1,900 µl of Buffer X for each sample as described in the protocol for the Neural Dissociation Kit For Example, for 4 samples, mix 200 µl of Enzyme P with 7,600 µl of B....

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Disclosures

No conflicts of interest declared.

Materials

List of materials used in this article
NameCompanyCatalog NumberComments
Neural Dissociation Kit (P)Miltenyi Biotec130-092-628
Myelin Removal Beads IIMiltenyi Biotec130-096-733
LS ColumnsMiltenyi Biotec130-042-401
QuadroMACS SeparatorMiltenyi Biotec130-090-976
MACS MultiStandMiltenyi Biotec130-042-303
Nylon Mesh SheetAmazonCMN-0074-10YD40 inch width, 80 micron size mesh
Fc Block / anti-CD32BD BiosciencesBDB550270Reactivity for rat
APC-conjugated CD11b antibodyBiolegend201809Reactivity for rat
Rabbit anti-GLT1Novus BiologicalsNBP1-20136Reactivity for rat or human
PE-conjugated anti-rabbit secondary antibodyeBioscience1037259Secondary antibody for anti-GLT1
FITC-conjugated anti-rat CD90 (Thy1) mouse antibodyBiolegend202504Reactivity for rat

Tags

Hippocampus IsolationNeural Cell IsolationTissue DigestionMagnetic SeparationMyelin RemovalCell Strainer FiltrationCentrifugation ProtocolFluorescence Activated Cell SortingSingle Cell Suspension