Method Article

Installation of Optical Windows in the Brain of Transgenic Mice to Image Neural Activities

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July 8th, 2025

In This Article

Abstract

Source: Lin, X., et al. Imaging Neural Activity in the Primary Somatosensory Cortex Using Thy1-GCaMP6s Transgenic Mice. J. Vis. Exp. (2019).

This video demonstrates the brain's neural activity recording through an optical window in transgenic mice. The mice express a fluorescent protein that enables the detection of neural activities. A small portion of the skull is carefully removed to install an optical window, and the skull is then covered with black cement to block light before imaging.

Protocol

All procedures involving animal models have been reviewed by the local institutional animal care committee and the JoVE veterinary review board.

1. Preparing the Animal for Imaging

  1. Place sterile gauze, cotton swabs, and autoclaved surgical tools in the surgery area. Turn on a Micro Bead Sterilizer for intersurgery sterilization of surgical tools.
  2. Anesthetize the mouse (male or female, 1.5–2.5 months, 20–25 g) by intraperitoneal injection (i.p.) of a mixture of ketamine (17.2 mg/mL), xylazine (0.475 mg/mL) and acepromazine (0.238 mg/mL) (6 µL/g body weight). Wait until the proper depth of anesthesia is reached when the animal ceases to respond to a toe pinch stimulus and has no corneal reflex. During the surgery, give a booster dose of 1/3 of the original dose of the anesthetic cocktail as needed to maintain the original anesthetic state.
  3. Inject buprenorphine subcutaneously (s.c.; 0.05–0.10 mg/kg) as an analgesic agent prior to surgery. Apply protective ointment to the eyes of the animal to prevent corneal drying and cataract formation.
  4. Place a GCaMP6s transgenic mouse on a heating pad to prevent hypothermia and cover it with a sterile surgical drape. Stabilize the animal's head with a Head Holding Adaptor for Mice.
  5. Shave the head over most of the scalp with a double-edge razor blade. Clean the surgical area with a sterile alcohol preparation pad, followed by a povidone-iodine solution.

2. Chronic Cranial Window Preparation

  1. Make a rectangular cut of the scalp (2 mm x 3 mm) with a pair of scissors on one side (right) of the skull. Push the skin aside with a cotton swab to create an exposure area of >3 mm in diameter (Figure 1A). Remove the connective tissue attached to the skull by gently scraping the skull with a blunt microsurgical blade (Scalpel Blade #10; Figure 1C).
  2. Mark the S1 area by gently drawing a circle (3 mm in diameter, center coordination: -1.5 mm from the bregma and 2.5 mm from the midline) on the skull using a dental drill (Figure 2B).
  3. Perform the same procedure on the left skull (Figure 2B).
  4. Apply a thin layer of Cyanoacrylate Super Glue to the bone to provide a base for dental cement application.
  5. Under a dissecting microscope, thin down a circular groove in the skull around the S1 area using a high-speed microdrill (Figure 1D). The purpose is to create a smooth edge for the placement of an optical window onto it.
  6. Repeatedly apply artificial cerebrospinal fluid (ACSF, room temperature) to the skull periodically during the thinning process to facilitate drilling and dissipate heat. Perform the drilling intermittently to avoid friction-induced overheating. Suck away the bone debris with a house vacuum line or a vacuum pump.
  7. After approximately 2/3 depth of the bone is drilled, slowly and carefully thin the remaining 1/3 bone until a circular piece of the skull (bone flap) is completely free from the surrounding skull.
  8. Slowly and carefully remove the circular bone flap with a pair of # 5/45 forceps and expose the dura (Figure 2C; Figure 1E).
  9. Keep the exposed brain region moist with ACSF (Figure 1E). Avoid any damage to pial vessels since hemorrhage will alter cerebral blood flow, accelerate brain swelling, and severely degrade imaging quality.
  10. Perform the same procedure on the left (contralateral) side of the skull.
  11. For assembling the optical window, use optical adhesive to glue and cure between coverglass layers one at a time. If necessary, warm the optical window (50 °C for 12 h) in an incubator to enhance the adhesive bonding. The optical window contains 2 portions: the top portion contains a single round cover glass with a diameter of 5 mm and the bottom portion contains 1–3 round cover glasses with a diameter of 3 mm (Figure 2D).
  12. Store the optical window in ethanol (70%, vol/vol) and rinse it with sterile saline before use. Before optical window installation, check the optical window for imperfections, including an incorrect amount of optical adhesive or inaccurate alignment under a stereoscope.
  13. Install the optical window over the craniotomy region (Figure 2D). The top portion of the optical window rests on the skull, and the bottom portion of the optical window fits within the craniotomized opening and rests on the dura in the presence of CSF (Figure 2D, E).
  14. Seal the top portion of the optical window edge to the skull with the Cyanoacrylate Super Glue (Figure 2F; Figure 1F).
  15. When the Cyanoacrylate Super Glue has dried, apply black dental cement (Dentsply) to cover the glass edge. Apply dental cement to all the exposed skull and wound margins to block light (Figure 2G-H; Figure 1B).
  16. Perform the same procedure on the left side.
  17. Allow the animal to recover on the heating pad and return the animal to its home cage for recovery under appropriate monitoring. Provide wet food to facilitate chewing and hydration. To reduce pain, administer buprenorphine s.c. (0.05–2.0 mg/kg) every 8–12 h postinjury for 2 days. Allow the mouse to recover for an additional 7–10 days before imaging.

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Results

Mouse cranial implantation; microscope images of brain tissue; experimental neurosurgery procedure.
Figure 1. Creation of bilateral windows on the skull. (A) A photographic image shows 2 cranial optical windows on each side of the skull overlying the S1 area. (B) High magnification of the boxed region of the image (A) showing bilateral optical windows ...

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Disclosures

No conflicts of interest declared.

Materials

List of materials used in this article
NameCompanyCatalog NumberComments
C57BL/6J-Tg(Thy1-GCaMP6s)GP4.3Dkim/JJackson24275Can be any strains made by the genetically-encoded neuronal indicator and effector expressing the green fluorescent calcium indicator, GCaMP, in subsets of excitatory neurons in the cortex.
B6.Cg-Tg(Thy1-EGFP)OJrs/GfngJ.Jackson7919Can be any strains expressing EGFP in subsets of neurons within specific populations in the cortex; providing a bright, vital Golgi-like stain.
Dumont no. 5 forceps, standard, DumoxelFine Science Tools11251-30Can be any brand of choice.
Dumont no. 5SF forcepsFine Science Tools11252-00Can be any brand of choice.
Micro Bead SterilizerSouthern LabwareB1201Can be any brand of choice.
Harishige's SG-4N Head Holding AdaptorTritech ResearchSG-4NCan be any brand of choice.
Ideal Micro-Drill Complete KitHarvard Apparatus72-6065Can be any brand of choice.
Burrs for Micro DrillFine Science Tools19007-05Can be any brand of choice.
Round cover glass, 3 mmHarvard BiosciencesW4 64-0720Can be any brand of choice.
Round cover glass, 5 mmHarvard BiosciencesW4 64-0700Can be any brand of choice.
Norland optical adhesiveNorland Products7106Can be any brand of choice.
Loctite liquid super glueWB MasonLOC1647358Can be any brand of choice.
Grip cement kit, powder and solventDentsply675570Can be any brand of choice. Mix 5 parts of white dental cement powder (Grip Cement) with one part of black Tempera powder paint (to shield from light; some users prefer a 10:1 ratio).
Gel foamMoore Medical2928Can be any brand of choice.
Micro dissecting scissorsRobozRS-5841Can be any brand of choice.
Artificial cerebrospinal fluid (ASF)--The ACSF contains 125 mM NaCl, 4.5 mM KCl, 26 mM NaHCO3, 1.25 mM NaH2PO4, 2 mM CaCl2, 1 mM MgCl2 and 20 mM glucose. Bubble the ACSF with oxygen (95% oxygen, 5% carbon dioxide) and adjust the pH to 7.4. Prepare fresh ACSF solution before every experiment.

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Tags

Optical Window InstallationNeural Activity ImagingSkull ThinningCraniotomy ProcedureBlack Dental CementTwo Photon MicroscopyThy1 GCaMP6s MiceFluorescent Protein DetectionHead Holding Adaptor

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