Method Article

Juxtacellular Recording and Staining for Precise Mapping of Neural Activity in an Awake Rat

June 18th, 2025

In This Article

Abstract

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Source: Moore, J. D., et al. Juxtacellular Monitoring and Localization of Single Neurons within Sub-cortical Brain Structures of Alert, Head-restrained Rats. J. Vis. Exp. (2015)

This video demonstrates the method of juxtacellular recording and staining in a restrained, awake rat. The procedure involves recording signals from neurons and injecting dye to precisely localize the recording site. This technique allows accurate mapping of neural activity to the brain's anatomical structure.

Protocol

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All procedures involving animal models have been reviewed by the local institutional animal care com-mittee and the JoVE veterinary review board.

1. Juxtacellular Monitoring of Neuronal Units

  1. Pull quartz capillary tubing on a carbon dioxide laser micropipette puller (see Materials section) with tip diameters of less than 1 μm (Figure 2A).
    NOTE: The heating parameters will vary according to the particular instrument, and that the required neck diameter will vary depending on the brain structure of interest. For recordings in rat thalamus, micropipettes have necks ranging from 5-7 mm.
  2. Secure the pipette in place under a differential interference contrast (DIC) microscope equipped with long working distance objectives. Use modeling clay to hold the pipette in place on the microscope’s stage.
  3. Slowly move a glass block (0.5 - 1 cm thick; a piece of glass used for making ultra-microtome knives is convenient) into the field of view with the pipette tip. Using the stage micromanipulator, gently touch the pipette tip to the glass, causing it to break. Repeat as necessary until the pipette tip outer diameter is between 1-3 μm (Figure 2B, C). Ensure that these micropipettes have impedances between approximately 5-15 MΩ.
  4. Prepare extracellular saline (135 mM NaCl, 5.4 mM KCl, 1.8 mM CaCl2, 1 mM MgCl2, 5 mM HEPES (4-(2-hydroxyethyl)piperazine-1-ethanesulfonic acid), pH 7.2 with NaOH) and add 2% (w/v) Chicago Sky Blue. Fill the back end of the pipette with the solution using a syringe with a 30 G needle or smaller. Alternatively, for single-cell juxtacellular labeling, add 2% (w/v) Neurobiotin or biotinylated dextran amine (BDA-3000 or BDA-10000) to the saline solution in place of Chicago Sky Blue.
  5. Place the rat inside the cloth sock inside the rigid tube on an appropriate experimental jig (Figure 1). Wait a minimum of 72 hr after surgery before placing the animal on the head-restraint jig. Tighten the drawstring around the upper sternum, rather than the neck, to avoid obstruction of the airway. If breathing appears to be labored or obstructed, loosen the drawstring or move it posteriorly. Carry out this procedure while the rat is alert.
  6. Attach the head-restraining plate on the rat to the corresponding piece on the jig. To do this, first pin the head-restraint plate in place, and then secure it using a 4-40 screw. Be sure to wait until the animal is calm in order to avoid applying excessive torque to the head. Next, place an 8-32 nut on the head-restraining bolt that is implanted in the rat. Then screw in a threaded stainless-steel rod to the head bolt. Affix the rod to the experimental jig in such a way that it can be tightened in place (Figure 1).
    NOTE: Securing the animal with the head bolt as well as the head-restraint plate minimizes the bending of the apparatus and improves recording stability. In most cases, recording can commence on the first day the animal is head-restrained. However, if the animal fidgets excessively or vocalizes, provide one day of head-restraint habituation training before commencing any recordings. In this case, leave the animal on the jig for 15 min and then place it back in its cage. Repeat this step the following day and continue with the protocol.
  7. Open the recording chamber and remove the silicone gel. If tissue has regrown in the craniotomy, clean it using fine forceps.
  8. Attach the pipette to the motorized micromanipulator, and plug in the headstage pre-amplifier.
    NOTE: In the present demonstration, a small relay circuit on the head stage switches between the amplifier lead wires and an external current source with high compliance(Figure 3A-C). Note that some amplifiers have an appropriate built-in high-compliance source.
  9. Use the motorized micromanipulator to move the tip of the pipette to the stereotaxically identified mark in the recording chamber. Note the coordinates of this location. Be careful not to break the tip of the pipette on the cranium.
  10. Move the pipette to the desired recording location in the anterior-posterior and mediolateral axes. Then advance the pipette ventrally through the dura until it is approximately 500 μm dorsal to the intended recording location.
  11. Slowly advance the pipette while listening for spiking events on an audio monitor of the amplified voltage recorded between the pipette tip and the reference wire. Once spiking events are identified, continue to move the pipette 0-100 μm until positive-going voltage deflections greater than approximately 500 μV are observed.
    NOTE: The electrode resistance will increase by a factor of approximately 1.5-10 when this occurs.
  12. Recording should begin once a unit has been isolated, along with all other behavioral and physiological measures of interest. In the present demonstration, self-generated vibrissa movements are monitored with high-speed videography (see Materials section).
  13. To label the recording site, switch the electrode leads to connect to the current source. There are several ways to do this, using either a relay circuit(Figure 3A-C), a built-in current source on the amplifier, or manually(Figure 3D). Pass -4 μA with 2-sec pulses at 50% duty cycle for 4 min to iontophoretically inject Chicago Sky Blue through the pipette.
  14. Kill and perfuse the animal after several labeling procedures according to standard practice. Section the brain and counterstain as necessary to identify the anatomical location of the recording site. Counterstain the tissue for cytochrome oxidase reactivity. Alternatively, identify the Chicago Sky Blue deposits using fluorescence microscopy.
    NOTE: To accurately differentiate between different labeled units, it is important that all labels are made with the same pipette on the same day, without unclamping the pipette between labels. In this case, recording sites can be differentiated by their relative locations in post-hoc histology, along with the noted manipulator coordinates of each site. For unambiguous identification, mark the labels at least 200 μm apart from one another, and no more than 3-5 labels per brain region.

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Results

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Head restraint apparatus diagram for rodent study; includes PVC tube, clamps, optomechanical post.

Figure 1: Experimental jig. Diagram of rat in the mechanical jig for electrophysiological and beh...

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Materials

List of materials used in this article
NameCompanyCatalog NumberComments
Ketaset (Ketamine HCl)Fort DodgeN/A
Anased (Xylazine solution)Lloyd LaboratoriesN/A
Betadyne (Povidone-Iodine)CVS Pharmacy269281
Loctite 495Grainger Industrial Supply4KL8620-40 cp cyanoacrylate
Vetbond3M1469SB
Grip cement powderDentsply Intl675571For the base of the recording chamber
Grip cement liquidDentsply Intl675572For the base of the recording chamber
Silicone GelDow CorningMar-80
Jet denture repair acrylic powderLang Dental Manufacturing Co.N/AFor securing the head restraint apparatus to the cranium
Ortho-Jet Fast curing orthodontic acrylic resin liquidLang Dental Manufacturing Co.N/AFor securing the head restraint apparatus to the cranium
Chicago sky blueSigmaC8679
ParaformaldehydeSigma158127For perfusion and tissue fixation
Phosphate-buffered salineSigmaP3813For perfusion and tissue fixation
Cytochrome CSigmaC2506
DiaminobenzidineSigmaD5905
Rat sockSew Elegant (San Diego, CA)N/A
PVC tube 2 ½”U.S. Plastic Co.34108
Subminiature D pins & socketsTE Connectivity205089-1
Stainless steel music wire 0.010” diameterPrecision Brand Products, Inc.21010
Stereotaxic holding frameKopf InstrumentsModel 900
Stereotaxic ear barsKopf InstrumentsModel 957
Stereotaxic manipulatorKopf InstrumentsModel 960
½ mm drill burrHenry Schein100-3995
Quiet-Air dental drillMidwest Dental393-1600
Stainless steel 0-80 1/8” screwFastener superstore247438
0.2mL centrifuge tubeFisher Scientific05-407-8A
Custom head-holding barUCSD SIO Machine ShopN/A
Right angle post-clampNewportMCA-1
8-32 3/4” screwFastener Superstore240181
4-40 ¼” screwFastener Superstore239958
Quartz capillary tubingSutter InstrumentsQF-100-60-10
Motorized micromanipulatorSutter InstrumentsMP-285
Microelectrode amplifierMolecular DevicesMulticlamp 700BAlternate part: Molecular Devices Axoclamp 900A
Microelectrode amplifier head stageMolecular DevicesCV-7BAlternate part: HS-9Ax10 with Molecular Devices Axoclamp 900A
Isolated pulse stimulatorA-M SystemsModel 2100Alternate part: HS-9Ax10 with Molecular Devices Axoclamp 900A
Audio monitorRadio Shack32-2040
Electrode lead wireCooner wireNEF34-1646
Relay for amplifier head-stageCOTO Technology#2342-05-000(optional) Used with a custom-made printed circuit board (UCSD Physics Electronics Shop), Figure 6A-C
Digital video cameraBaslerA602fm
Pipette holderWarner Instruments#MEW-F10T
Custom head-holding plateUCSD SIO Machine ShopN/A

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Tags

Juxtacellular RecordingNeural Activity MappingAwake RatBrain AnatomyMicromanipulatorChicago Blue DyeElectrical PulsesHead RestraintSignal RecordingDye Injection

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