Permanent MCAO was induced by performing craniotomy, followed by coagulation and destruction of the middle cerebral artery by diathermy combined with permanent occlusion of the ipsilesional common carotid artery and 60 min occlusion of the contralesional common carotid artery. A schematic of the setup of the equipment and occluded MCA is shown in Figure 1, and of the carotid arteries in Figure 2 (above).
Stroke outcome was assessed 24 hr and 8 weeks after stroke by measuring the infarct volume on 40 x 0.5 mm slices (from rostral end of olfactory bulb to rostral end of spinal cord) using the Region of Interest toolkit in a medical image display package. A representative T2 weighted structural MRI scan is shown for the same animal at 24 hr and 8 weeks (Figure 3A). The infarct volume was identified by the areas of the rat brain showing a hyperintense signal; as T2 weighted images show water or plasma as a bright white area. It is known that there is an increase in edema and brain swelling after stroke, and this can be measured from a T2-weighted scan which has been correlated to histological measurements of infarct volume18. However, edema present early after stroke (e.g., at 24 hr) can lead to an overestimation of the final lesion volume (e.g., at 8 weeks) and therefore we also present mean infarct volumes adjusted using Gerriet’s formulae. Figure 3B shows mean data from the raw (unadjusted) lesion volume at 24 hr as 62.8 mm3 (± 25.4 mm3 SD, top graph); this occupies 9.8% of the affected hemisphere (± 4.2% SD, middle graph). When corrected for brain swelling using Gerriets’ formulae this value is reduced to 4.5% (± 2.0% SD, bottom graph).
Stroke severity was also measured using the Montoya staircase test15. In brief, animals were pre-trained to retrieve sugar pellets for 4 weeks prior to MCAO stroke surgery, and tested for 8 weeks following stroke (Figure 4) to confirm a sustained deficit. Rats were placed in the staircase apparatus for 10 min and the number of pellets retrieved was recorded (out of 21 pellets) and displayed as a percentage (group means ± standard errors). A regression analysis was performed to fit the line to the data.
Figure 5 shows the sample size calculation using infarct volume data (for potential effects of candidate therapies), analyzed using an algorithm in power analysis software for a t-test using “Difference between two independent means (two groups)” and using the (uncorrected) means and standard deviations from Figure 3B. The information in Figure 5 and Table 1 show that 12 rats would be required per group to detect a therapy that reduced infarct volume by 50% at 24 hr, whilst Figure 6 shows an “X-Y plot” of power achieved using varying numbers of animals. Table 1 summarizes sample size calculations for all time points.

Figure 3. T2-weighted structural MRI is used to measure the size of the infarct and brain swelling after stroke. (A) A T2-weighted magnetic resonance image of the same rat brain 24 hr and 8 weeks after induction of stroke. The white area represents the lesion, but also contains some vasogenic edema that resolves by 8 weeks. (B) Infarct volumes were measured using a medical image display package Region of Interest Toolkit, and are plotted on a graph representing the mean ± SD for the 3 time points used (n = 6). Raw lesion volume (not corrected for brain swelling due to edema), percentage lesion of affected hemisphere (uncorrected for swelling), and percentage lesion of hemisphere corrected for brain swelling using Gerriets’ formulae are shown here. SD was used rather than SEM in order to perform sample size calculations (see Figure 5). Please click here to view a larger version of this figure.

Figure 4. The staircase test shows impairments in grasping and retrieving pellets. In this stroke model there was very little spontaneous recovery. Stroke in elderly rats persistently impairs dexterity, shown by weekly testing using the “staircase test” of pellet reaching. Inset: A picture of a rat performing the behavioral test. The graph shows the mean (± standard error) number of pellets retrieved (out of 21, expressed as a percentage) per week by the affected forepaw. n = 5. Please click here to view a larger version of this figure.

Figure 5. Sample size calculations to determine group numbers of rats required to detect a desired therapeutic effect. This screen shot, taken from power analysis software, shows that 12 rats per group would be required to detect a therapy that reduced infarct volume by 50% at 24 hr. Please click here to view a larger version of this figure.

Figure 6. Power achieved using various total numbers of animals. An “X-Y plot for a range of values” from power analysis software shows the power that would be obtained for experiments using various (total) numbers of elderly rats, given the parameters shown in Figure 5. Table 1 summarizes all our results. Please click here to view a larger version of this figure.
| Time after stroke: | Number of rats per group required to detect a reduction in lesion volume of: |
| 75% | 50% | 25% |
| 24 hr | 6 | 12 | 42 |
| 8 weeks | 4 | 5 | 17 |
Table 1. Calculations of sample sizes per group for hypothetical future experiments. Calculated using power analysis software (See Figures 5 and 6). Table shows number of rats per group required for a two-group experiment to detect a 25%, 50% and 75% reduction in lesion volume at each of the timepoints in this study.