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Dissecting user demands for tools to generate cell wounds
The current experimental method to generate cell wounds demands further enhancement to address many issues that compromise biological reproducibility, robustness, economic consumption, and user experience of cell wound healing assay. We utilized the hard laddering method to analyze the requirements of users involved in biological experiments via questionnaires29 (Figure 1A). The information involved in the questionnaire, such as names, was anonymized to protect their privacy. The details of the questionnaire are shown in Table 1. During 6 weeks of survey for 100 individuals, 97 fully completed questionnaires were received, 3 suspicious and invalid questionnaires were excluded; the response rate was 97.00%.
Results demonstrate that the most troubling problems in cell wound healing assay were serrated edge (not straight) and unstable width or areas of wounds, accounting for 55.67% and 29.90%, respectively. These were significantly higher than those of lower cell growth rate, cell contamination and other options with 3.09%, 5.15%, and 6.19%, respectively (p < 0.001, Figure 1B). Regarding the selection of tools to create wounds, the use of pipette tips was much more prevalent than cell culture inserts (Figure 1C). It was mainly ascribed to the fact that cell culture inserts are rather expensive and non-reusable (Figure 1D), while pipette tips are cheap, show experimental reproducibility (6.59%) and cell viability (20.88%, Figure 1E). Importantly, up to 69.23% of users argued that the price of cell culture inserts was over their budget (Figure 1D). In contrast, only 6 subjects chose cell culture inserts, in which only 16.67% thought their price was acceptable (Figure 1F). Finally, as for the innovative tool to generate cell wounds, 86.60% of them were optimistic, while only fewer users were unwilling (4.12%, Figure 1G).
Subsequently, product features that users urgently needed were dissected30,31,32. These features included straight wounds, stable width and area of wounds, high reproducibility, and acceptable price. Accordingly, subsequent design activities were carried out.
Decision to design elements and materials used in developing cell scraper
The data above shows that laboratory supplies implemented in routine biological research must be strictly sterile to avoid cell contamination33. Therefore, the proposed cell scraper should be sterile. Although disposable tools could be sterilized by ethylene oxide, the experimental cost will inevitably increase34,35,36. Therefore, instead of disposable materials, we propose to design the cell scraper with a reusable material with great tolerance to high-pressure steam sterilization (121.3 °C), to reduce the cost and increase the flexibility when applied in different cases37. To meet these requirements, the material used to construct the cell scraper must have certain physical and chemical features, including resistance to heat, high pressure, and water vapor corrosion.
For the intended use of the cell scraper, in addition to meeting the basic functions such as making the edge-straight wounds, it should also have an appealing design and color. In terms of modeling, considering the targeted and application fields, the overall style should be congenial for the laboratories. The appearance should not be too ostentatious to hinder the personnel from observing the experimental progression. Moreover, its size should be suitable for six-well plates, and the surface should have a protrusion for the tweezers to pick it up stably.
CMF in design is a critical aspect of product design influencing aesthetics and user experience. Color choice impacts emotional response, material selection affects functionality and sustainability, and finish determines the tactile feel and visual appeal. CMF designers harmonize these elements, considering market trends and brand identity, to create products that resonate with users.
According to the CMF theory, three critical factors, including color, material, and finishing process, were considered to determine their impacts on function and visual effect24. The color selection was conducted first. In this context, color refers to the intrinsic color, which is the inherent color of an object or substance under standard lighting conditions, devoid of the influence of external light sources or reflections. Given that the six-well plate is made of PP with a transparent surface, dark gray was chosen as the intrinsic color. This choice was made for easy identification and operation, as dark gray provides optimal contrast and visibility when overlaid with other colors. Besides, dark gray is less likely to cause color distortion when combined with other colors, which is also crucial for observation. Essential functional components were further distinguished by black (Figure 2A).
The commercial color matching system was selected as the standard for color selection due to its widespread acceptance and use in various industries. Relying on the company's ability to reproduce consistent colors across different mediums, it was chosen for the study as this is crucial to ensure accurate and consistent color representation.
The material selection was performed based on the aforementioned results of questionnaires. The shell and components of the scraper were made from a heat-resisting plastic, polypropylene (PP), to meet the requirement of sterilization via autoclaving as an example shown in Figure 2B. high-carbon steel is suitable for springs, because it is stable against high- and low-temperature, corrosion-resistant laboratory environments. High-density sponges were used for buffering and placed at the end of the slide.
Finally, the finishing process was developed. As the cell scraper is frequently used and easily contaminated and the surface quality affects sterilization, a smooth and glossy surface is preferable for the cell scraper as it helps the user to quickly identify the source of contamination and deal with it, giving a sense of cleanliness. The tips are partially sanded to avoid damage to the bottom of the culture dish, which can affect the culture environment and result in restriction of cell proliferation38.
Design and prototype of the cell scraper
Three prototypes of cell scraper were designed based on the results mentioned above (Figure 3A). Studies show that the most commonly used cell wounds within cell culture plates were cross-shaped39, which is quite different from the prototype I that employed rectangular wounds; thus prototype I had been waived (Figure 3A). Although prototype II and III could both create cross-shaped cell-free areas, the slide rail of prototype II was difficult to fix in cell culture discs and its infrastructure was rather complicated (Figure 3A). After prudent discussions, prototype III was distinguished as the final model to produce cell scraper.
Notably, given that the shape of tips could directly affect the cell-free area in terms of edges and sizes, three sketches were designed for selection. The sketch I had a sharp top, which could provide very straight edges; however, the culture interface allowing cell proliferation might be impaired if the tips are too sharp (Figure 3B). Sketch II offered a square top, which might avoid impairment of the cell culture plates. However, as the contact surface between the tip and the bottom of the culture plate is square, it is unstable when using it (Figure 3B). Sketch III provided a blunt rounded tip, effectively avoiding the above problems (Figure 3C). Therefore, it was selected as the final design.
The design was optimized in three aspects: the fixer fixing method, the built-in cushion sponge, and the ease of gripping, respectively. First, the expected product fixing methods included buckling40, mortise and tenon41, and pivoting42. Considering the actual production cost and operability, a claw was designed under the cross-shaped fixer to facilitate clamping the edge of the well. Additionally, in the cell scratch healing test, we observed that the tips bounced back after touching the wall near the end due to the fixed length and hardness of the slides, which affected the scratch state. Therefore, we added a cushioning sponge to the end of the slide to stabilize the motion of the tips. (Figure 3A,C). Finally, a surface depression was added to the protrusion to facilitate tweezer gripping.
A three-dimensional model was further constructed using the 3D design software. Its rendering is shown in Figure 4A. The explosive plot elaborates the detailed inner structures of the cell scraper, which shows its necessary characteristics discussed above (Figure 4B). Additionally, to achieve the goal of smooth sliding of the tips and straight edges, the internal mechanical power transmission structure is adopted. The whole functional unit of the cell scraper is composed of the control part. In actual work, the linkage lever inside the cell scraper is connected with the top button, and the end moves downward after applying pressure to make the end buckle. The spring inside the slide is released to push the tips to move. Finally, it stops at the sponge with a narrow slit to finish the scraping and then toggles to reset when used again (Figure 5A). Moreover, the ease of learning and convenient operation are the criteria for a biologist to measure product quality. Therefore, for the appearance design of the product, the surface layout followed the principle of symmetry and neatness43,44, distinguishing and highlighting different components through different shades of black, white, and gray colors (Figure 5A).
Cell scraper is superior to the tips scratching method in practical use
The physical product of the cell scraper was prepared using the grinding and assembly method (Figure 5B). As expected, the cell scraper integrated excellently with the six-well plate, with the upper cross-shaped holder fitting closely to the edge of the plate, providing a strong fixation (Figure 5C). Moreover, the tips fitted precisely to the bottom of the six-well plate, facilitating the smooth generation of cell-free areas. Finally, the cell scraper was autoclaved to test whether it could be reusable. As results shown in Figure 5D, the present cell scraper held the original shape and physical performances even after autoclaving under 121.3 °C for 30 min.
The cell scraper outperformed the existing cell wound creation method in the benchmark test. After repeated tests, the cell scratcher showed high stability and reproducibility in the preparation of the wound, presented a low fluctuation in the area of each wound and nearly straight edges, with a standard deviation of cell-free area of 483.73 and deviation to straight edge of 5041.33 ± 2420.00. In contrast, the area of each wound prepared by the pipette tips showed a higher fluctuation, with a standard deviation of cell-free area of 3905.80 and deviation to straight edge of 19562.33 ± 1068.39 (Figure 6A-C).
Finally, the effect on cell viability after cell wounds was evaluated (Figure 6D). The results demonstrated that 12 h after the cell wound completion, the cell viability was slightly but significantly higher in the cell scraper group than in the tips group. EdU assay was conducted to confirm these results further and clarify the impact of different cell wound preparation methods on cell proliferation, i.e., DNA replication. The results of the EdU assay showed that the percentage of proliferating cells in the cell scraper group (24.41% ± 0.48) was significantly higher than that in the tips method (18.79% ± 1.46) after 12 h (Figure 6E,F).
These data strongly attested that the present cell wound generator outperformed the current method to create cell wounds in terms of stability and biological reproducibility. It had a low impact on cell viability and proliferation. All these remarkable advantages of the cell wound generator confirmed its potential to improve the current cell wound assays by ensuring the reliability and repeatability of the resultant data.

Figure 1: User demands analyses. (A) Sankey plot presents the workflow of questionnaires-based investigation for experimenters. (B) to (G) exhibit the results of questionnaires, including Questions 1 to 6. Please click here to view a larger version of this figure.

Figure 2: Product design with colors and materials used. (A) Colors selection. (B) Autoclave used in biological experiments. Please click here to view a larger version of this figure.

Figure 3: Product design of detailed structures. (A) Three prototype candidates of cell scraper. (B) Three sketches of tip design. (C) Three-view drawing of selected prototype III presenting its overall design and the physical and spatial parameters. Please click here to view a larger version of this figure.

Figure 4: Rendered three-dimensional model and inner structures display. (A) Render of three-dimensional model. (B) Explosive plot demonstrating the inner structures of the proposed cell scraper. Please click here to view a larger version of this figure.

Figure 5: Working mechanisms of cell scraper. (A) The sketches show how cell scraper works. (B) Physical product of cell scraper. (C) The cell scraper fits in a 6-well plate. Please click here to view a larger version of this figure.

Figure 6: Experimental validation of cell scraper. (A) Cell wounds generated by different methods and their grouped comparison results were shown in (B) and (C), the scale bar is 100 µm. (D) Cell viability results. (E) and (F) Edu assay results, the scale bar is 50 µm. For the statistical evaluation, t-test was conducted for grouped comparison, and the original p-value was adjusted by Holm-Bonferroni test to avoid false positive results. Please click here to view a larger version of this figure.
| I) Which of the following is the most troubling issue for you in the cell scratching experiment? |
| A) No straight edges |
| B) Unstable width |
| C) Slow proliferation |
| D) Cell contamination |
| E) Other |
| II) Which tools do you use for generating cell wounds |
| A) Pipette tips (turn to question III) |
| B) Cell culture inserts (turn to question IV-V) |
| III) Why don’t you choose cell culture inserts? |
| A) Cell viability |
| B) Not reusable |
| C) Cost |
| D) Other |
| IV) Why did you choose cell culture inserts? |
| A) Cost |
| B) Repeatability |
| C) Other |
| V) What do you think are the most severe problems with cell culture inserts? |
| A) Cell status |
| B) Not reusable |
| C) Expensive |
| D) Other |
| E) Satisfied |
| VI) If there was an inexpensive, reusable (autoclavable), highly reproducible scratching tool, how willing would you be to buy and use it? |
| A) Very willing |
| B) Willing |
| C) Not sure |
| D) Unwilling |
Table 1: The questionnaire used in this study comprises six questions intended to understand situations biologists encounter during cell wound healing assays.