Here, we present a protocol for the design, assembly, and operation of a bubble-free, closed-loop microfluidic device for endothelial cell culture under physiological flow conditions in simulated microgravity.
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Method Article
Here, we present a protocol for the design, assembly, and operation of a bubble-free, closed-loop microfluidic device for endothelial cell culture under physiological flow conditions in simulated microgravity.
Microphysiological systems (MPS) are valuable in vitro models that recreate the structure and function of human tissues. Specifically, tissue- or organ-on-chips that incorporate microfluidic technology replicate the in vivo mechanical and biochemical environment while enabling real-time monitoring of cellular growth and development. These systems can be particularly useful for spaceflight studies, as they can be sent into space, such as to the International Space Station (ISS), to investigate the impact of space travel on the human body. A major impediment to the success of the MPS is the formation of bubbles, which can be pronounced in microgravity. This paper describes the design, assembly, and operation of a microphysiological cell culture system for use in simulated microgravity (e.g., run on a random positioning machine or clinostat). The incorporation of an orientation-independent bubble trap into the fluidic circuit has been shown to be highly effective for removing air bubbles in microgravity and enabling long-term endothelial cell culture. This closed-loop, orientation-independent microfluidic system can be used for bubble-free operation of tissue chips or organ-on-chips to simulate the combined effects of microgravity and flow or for deployment in space missions.
It is now well established, through mechanisms under investigation, that mechanical forces play a critical role in cellular function and in maintaining the fine balance between health and disease1. Of all the environmental stresses, gravitational force is unique and is rightfully assumed to be a constant, intransigent vector in the vast majority of biomedical science. However, spaceflight presents a unique microgravity environment, in which organisms' behavior may differ from that on Earth. Spaceflight experiments involving animals and human subjects show significant changes in physiology, underscoring the role of gravity in cellular and organismal homeostasis2.
Recently, NASA and other private agencies have shown considerable interest in developing tissue chips (or organ-on-chips) for deployment on space missions3. The tissue chips are designed to mimic the in vivo architecture, enabling them to model, with high fidelity, the physiological and mechanistic impact of microgravity and space radiation4. By utilizing donor-derived cells, tissue chips can also be used to investigate the astronaut’s sensitivity to microgravity and space radiation and develop preventive countermeasures5. Over the past five years, several organ systems, including the brain, liver, gut, blood vessels, heart, kidney, and lungs, have been modeled using tissue chips and launched aboard the ISS6. In vivo, organs are perfused by the vasculature to varying degrees, which determines their physiology - for instance, the liver is highly vascularized, whereas cartilage is much less so. Therefore, to accurately recapitulate organ function in vitro, an important consideration in the development of organ-on-chip systems is the incorporation of fluid flow into tissues and cells.
Microfluidics has been used to perfuse cells and tissues in organ-on-chip systems7,8. Appropriate fluid flow levels not only support nutrient transport into and waste product removal from the system but also maintain the physiological shear stress experienced by cells. However, at small dimensions, bubbles pose a persistent challenge at phase boundaries, leading to inaccurate measurements, damage, and blockages9. To mitigate this problem, bubble traps with active (e.g., vacuum degassing or external fields such as acoustic or thermal) and passive (e.g., a semipermeable membrane that depends on surface properties) designs have been used10,11. However, these microfluidic debubbler designs increase device fabrication complexity, compromise sample integrity, and lead to clogging and breaches of the barrier. The problems are exacerbated in space, where nucleation and bubble formation are much more pronounced, and the bubble mitigation strategies that are effective on Earth become largely ineffective12. Ground-based microgravity analogs can be generated using devices such as a rotating wall vessel (RWV) or a random positioning machine (RPM)13,14. Of interest, in RPM, the gravity vector is continuously reoriented, thus nearly zeroing out the time-averaged net gravitational stimulus on the sample. We have recently reported on the design, fabrication, and application of an orientation-independent bubble trap for perfusion culture of endothelial cells under simulated microgravity using an RPM15. In this article, we describe the step-by-step assembly and operation of a closed-loop perfusion system using the orientation-independent bubble trap and demonstrate its applicability for the culture of human umbilical vein endothelial cells as a model for continuous cell culture in simulated microgravity.
The closed-loop system consists of a microcontroller with a motor driver for frequency- and voltage-controlled micropump operation, a liquid flow sensor, a bubble trap15, and a microfluidic channel containing adherent endothelial cells. Specific components are detailed in the Table of Materials. The protocols below describe the assembly of system electronics (Step 1), assembly of fluidics (Step 2), sterilization and priming (Step 3 and 4), microfluidic cell culture integration (Step 4), assembly of micropumps and controller (Step 5), and the assembly of the entire system in an enclosure (Step 6). The closed-loop flow system was mounted atop the RPM to simulate microgravity using a custom-made enclosure (Step 7).
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1. System electronics
2. System fluidics connections
3. Experimental Preparation and System Sterilization
4. System priming and microfluidic cell channel integration
5. Microcontroller and micropumps enclosure (Optional)
6. Upper deck mounting plate (Optional)
7. Mounting on the random positioning machine (RPM)
8. Flow data collection
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Before collecting results on fluidics or cell culture, as described below, the system integrity should be verified at each major protocol checkpoint throughout the assembly and priming processes. Electronic connections can be easily checked by connecting the microcontroller and liquid flow sensor to a computer and communicating with each component via its respective application software. Tubing connections at barbed fittings are deemed sufficient once the tubing is pushed past the barb, and any fluidic component that has...
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A closed-loop, orientation-independent microfluidic system capable of operating in the absence of gravity has been developed and shown to be viable for the culture of endothelial cells under physiological flow conditions. The key components of the system are a microcontroller, a micropump, a liquid flow sensor, a cell culture microslide, and a custom 3D-printed orientation-independent bubble trap.
The bubble traps used in this work are fabricated from stereolithography resin1...
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The omnidirectional bubble trap is protected by the patent application US 18634723. There are no additional competing interests.
This work was supported by the NASA Space Biology grant # 80NSSC21K0272.
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| Name | Company | Catalog Number | Comments |
|---|---|---|---|
| 100% ethanol | Fisher Scientific | A4094 | Used to create a 70% ethanol solution for system sterilization (Minimum need 35 mL) |
| 6 mm black nylon round spacer, 7 mm OD, 3.2 mm ID | Exqutoo | ZH-0050 | Secures top mount to enclosure (Minimum need 4) |
| Acrylic plate, 75 mm long x 25 mm wide | Polymersan | ACRCS | Secures elbow Luer adapters to the microchannel slide (Minimum need 1) |
| A-male to mini-B cord USB 2.0 Cable | Ugreen Group Limited | 10355 | For connecting the computer to the microcontroller (Minimum need 1) |
| Bubble trap | (Custom) | For preventing bubble passage to the microslide (Minimum need 1) | |
| Bubble trap holder | Custom | 3D printed holder to keep bubble trap in place (Minimum need 2) | |
| Cell culture grade water | Fisher Scientific | MT25055CI | Used to flush out all traces of ethanol post-sterilization (Minimum need 30 mL) |
| Controller, pump, and enclosure mount (interior mount) | Custom | Mounting plate inside enclosure (Minimum need 1) | |
| Cross bar mount | Custom | Mounting cross bar attached enclosure mounting plate (Minimum need 1) | |
| DB15 breakout male + female connectors | ANMBEST | ANMBEST_MDDB15 | For connecting the computer to the random positioning machine and then to the microcontroller (Minimum need 1) |
| Elbow Luer to barb connector | ibidi | 10802 | Connects microslide to the flow loop (Minimum need 2) |
| Double-sided foam tape | 3M | 4026 | For compression of elbow Luer adapters on microchannel slide (Minimum need 1) |
| Enclosure (60 mm x 140 mm x 140 mm) | Hammond | 1554Q2GYCL | Houses the microcontroller and the micropumps (Minimum need 1) |
| Enclosure mount (bottom mount) | Custom | Mounting plate beneath enclosure (Minimum need 1) | |
| Female-female Luer coupler | Boao | Boao-Syringes-WAD2354 | Used to connect syringe to elbow Luer connector for cell culture medium priming (Minimum need 1) |
| Gibco RPMI 1640 cell culture medium | Thermo Fisher | 11875093 | Used to culture the endothelial cells (Minimum need 50 mL) |
| Grommets, 9/16" hole diameter and 1/8" thickness, 1/8" ID | McMaster-Carr | 9307K863 | For running tubing in and out of enclosure (Minimum need 8) |
| IDEX P-646 adapter fitting, 1/16" barb to 1/4-28 | IDEX | P-646 | Connects flow sensor to the flow loop (Minimum need 2) |
| Liquid flow sensor | Sensirion | SLF3-1300F | For flow data collection (Minimum need 1) |
| Liquid flow sensor mounting clamp | Sensirion | SLF3x Mounting Clamp | SLF3x mount (Minimum need 2) |
| Luer lock syringe (12 mL) | McKesson | 414624 | For vacuum priming (Minimum need 1) |
| Luer plug | Cole-Parmer | UX-50110-33 | For sealing the orientation-independent bubble traps (Minimum need 1) |
| M2 stainless steel nut | VIGRUE | B07PJQC7T6 | Secures liquid flow sensors to top mount (Minimum need 4) |
| M2×8 stainless steel screw | VIGRUE | B07PJQC7T6 | Secures liquid flow sensors to top mount (Minimum need 4) |
| M3 male-female nylon hex spacer standoff | Meijubol | B0GC6GN9S7 | Secures mp-Multiboard to interior mount (Minimum need 4) |
| M3 nylon washer | Sutemribor | 7.81573E+11 | Secures enlosure to bottom mount (Minimum need 16) |
| M3 stainless steel nut | VIGRUE | B07PJQC7T6 | Secures enclosure to bottom mount, cross bar to bottom mount, pump holder to interior mount (Minimum need 16) |
| M3 stainless steel washer | VIGRUE | B07PJQC7T6 | Secures cross bar to bottom mount, enclosure to bottom and inner mount, interior mount to pump holder (Minimum need 12) |
| M3×12 stainless steel button head screw | VIGRUE | B07PJQC7T6 | Secures enclosure to bottom mount (Minimum need 4) |
| M3×12 stainless steel socket cap screw | Fgruh | FG001-3 | Secures bubble trap holder to upper deck mount (Minimum need 2) |
| M3×6 Phillips pan head screw | Meijubol | B0GC6GN9S7 | Secures mp-Multiboard to interior mount (Minimum need 4) |
| M3×8 stainless steel screw | VIGRUE | B07PJQC7T6 | Secures cross bar to bottom mount, enclosure to interior mount, pump holder to interior mount (Minimum need 8) |
| M4 stainless steel nut | VIGRUE | B07PJQC7T6 | Secures top mount to enclosure (Minimum need 4) |
| M4 stainless steel washer | VIGRUE | B07PJQC7T6 | Secures top mount to enclosure (Minimum need 4) |
| M4-0.7 steel threaded rod | Arwnnklo | AR01 | Cut to ~6 inch lengths (Minimum need 4) |
| Male to female mini USB cable | Plinkwirekb | PCM-0725-L | For connecting the computer to the microcontroller (Minimum need 1) |
| Male to female mini USB right angle connector | UCEC | 4326453558 | For connecting the computer to the microcontroller (optional) (Minimum need 1) |
| Microchannel holder | Custom | 3D printed holder to keep microchannel centered (Minimum need 1) | |
| Microchannel slide, µ-slide VI 0.4 | ibidi | 80606 | For cell assays under flow (Minimum need 1) |
| Micropump | Bartels | MP6-HYB | For producing flow (Minimum need 1) |
| Micropump holder | Custom | Mounting fixture to hold micropump (Minimum need 1) | |
| mp-Multiboard with mp-Highdriver4 | Bartels | BM-E-0005 | For controlling the frequency and voltage settings of the micropumps (Minimum need 1) |
| mp-pump Cable | Bartels | BM-A-0055 | Used to electrically connect mp-Multiboard to the micropumps (Minimum need 1) |
| Nylon round spacer, 7 mm OD, 3.2 mm ID | Harfington | 2037015 | For securing tubing to micropump (Minimum need 2) |
| O-ring | ZDBB | 7.17327E+11 | Secures the male to female mini USB cable to the enclosure (optional) (Minimum need 3) |
| Plastic container | Herdusa | HDS10 PLASTIC BOX | Used as open reservoir for cell culture medium (Minimum need 1) |
| Polyurethane tubing, 1/8" I.D., 1/4" O.D. | PARKER | 95U-4-062-BLU-0100 | Secures top mount to enclosure (Minimum need 1.6 cm) |
| Random positioning machine | AIRBUS | Random Positioning Machine 2.0 (Minimum need 1) | |
| SCC1-USB cable | Sensirion | SCC1-USB 2M | Connects liquid flow sensors to computer (Minimum need 1) |
| Self-standing centrifuge tube | PEKYBIO | B0C13GZVD6 | Used to hold cell culture water/70% ethanol (Minimum need 2) |
| Spacer, 8 mm OD, 20 mm long aluminum | McMaster-Carr | 94669A062 | Minimum need 4 |
| Tygon PVC 1/16" ID x 1/8" OD | Saint-Gobain | B-44-3 | Connects all flow loop components (Minimum need 40 cm) |
| Upper deck mount | Custom | Mounting plate connected to liquid flow sensors and bubble trap (Minimum need 1) | |
| Wing nut, M4 x 0.7 mm, zinc-plated steel | Siptenk | S-TH-DLM-002 | Secures top mount to enclosure (Minimum need 4) |
| Zip-tie | HAVE ME TD | 7.32073E+11 | Secures cables when mounting system to RPM (Minimum need 4) |
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