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Molecular Methods in the Study of Vertebrate Retinal Development

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Sruti Patoori

Sruti Patoori

Thomas Jefferson University

<p>Sruti Patoori received her PhD in Molecular, Cellular, and Developmental Biology from the City University of New York (CUNY) Graduate Center in 2020. Her doctoral advisor was Dr. Mark Emerson and her work pertained to the role of gene regulatory elements in directing the fate of early-born retinal cell types.</p> <p>In particular, her doctoral work focused on cis-regulatory elements active in a fate-restricted progenitor population that preferentially generates cone photoreceptors and horizontal cells in the chick retina. She also conducted comparative studies development studies between mouse and thirteen-lined ground squirrel retinae and between owl and chick retinae. The goal of this work was to understand how evolution can act on developmental gene regulatory networks to generate retinae with more cone photoreceptors and horizontal cells.</p> <p>As of July 2020, she is a Postdoctoral Fellow in the laboratory of Dr. Marco Trizzino, in the Department of Biochemistry and Molecular Biology at Thomas Jefferson University. Dr. Patoori is continuing to study neuronal development in her postdoctoral work, with a focus on understanding how gene regulatory networks in hippocampal development differ between humans and chimpanzees. This work makes use of iPSC models to investigate how the evolution of this developmental process has shaped the human brain.</p>

Collection Overview

The vertebrate retina is a complex, laminated sensory organ. It consists of multiple neuronal cell types and subtypes which synapse on each other to detect visual information, refine it, and transmit it to the brain. The past two decades of work have led to important findings in retinal development, including the developmental relationships between cell types and the role of gene expression in cellular identity. While this research is broadly applicable to the study of neuronal development, a stronger understanding of retinal development also has implications for understanding congenital retinal defects and developing stem cell-based therapies to restore lost vision. Accomplishing this requires further study into how diverse retinal cell types are specified and how their precise synaptic connections are established.

This collection aims to highlight methods of studying retinal cell fate and circuitry development in a variety of models such as zebrafish, Xenopus, mouse, and chick. Flow cytometry, immunohistochemistry and electrophysiology have all been applied to studies of retinal development. The field of retinal development has also made use of genetics and molecular biology through gene expression methods such as RNA-seq, analysis of chromatin accessibility and epigenetic markers throughout development, and reporter-based assays of regulatory element activity. The goal is to provide a clear overview of important methods used to determine how retinal cell types and sub-types are specified from developing populations and how they establish the connections required for a functioning visual system.

Articles

4-Dimensional Imaging of Zebrafish Optic Cup Morphogenesis
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4-Dimensional Imaging of Zebrafish Optic Cup Morphogenesis

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2021