Tissue Acquisition Workflow

Tissue Acquisition Workflow is the planned process of obtaining biological tissue for laboratory analysis while preserving its identity, quality, and experimental value. It typically coordinates sample selection, collection, labeling, transport, and preparation under defined handling conditions, with timing and preservation methods chosen according to the tissue and downstream assay. In biology research, a consistent workflow helps reduce preanalytical variation and supports reliable histology, molecular analysis, cell isolation, and biobanking. Clear documentation of consent, provenance, storage, and processing also strengthens reproducibility, enables comparisons across studies, and helps researchers use limited biological specimens efficiently.

Tissue Acquisition Workflow - Related Videos

Research

JoVE Journal - Genetics
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A Web-Based Workflow for Selecting Gene- and Tissue-Specific Enhancers

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2025

We present a coding-free workflow for biologists to identify tissue-specific gene enhancers using only browser-based tools. Our protocol leverages public H3K4me1/H3K27ac histone marks and Hi-C data, enabling researchers without programming expertise to access, analyse, and identify potential regulatory elements associated with their genes of interest.

Research

JoVE Journal - Biology
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Array Tomography Workflow for the Targeted Acquisition of Volume Information using Scanning Electron Microscopy

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Cited by 16 •

2021

We describe the preparation of ribbons of serial sections and their collection on large transfer support for use as Array Tomography samples, along with automated imaging procedures in a scanning electron microscope. The protocol allows screening, retrieval, and targeted imaging of local, rare events, and the acquisition of large data volumes.

Research

JoVE Journal - Genetics

A Practical Workflow for Spatial Transcriptomics Data Analysis: From Data Acquisition to Advanced Analyses

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2026

This protocol presents a reproducible workflow for analyzing spatial transcriptomics data, guiding users from public data acquisition and Seurat-based quality control through integration, spatial feature detection, cell-type deconvolution, region-of-interest annotation, and cell–cell communication analysis, with practical checkpoints that support transparent execution.

Metabolic Support of Excised, Living Brain Tissues During Magnetic Resonance Microscopy Acquisition

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Cited by 2 •

2017

The current protocol describes a method by which users can maintain viability of acute hippocampal and cortical slice preparations during the collection of magnetic resonance microscopy data.

High-throughput Imaging and Analysis Workflow for Evaluating Skin Cell Phenotypes and Proliferation States in Tissue Samples

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Cited by 1 •

2025

The combination of iterative-bleaching-extends-multiplexity (IBEX) and a commercial nucleotide labeling assay (Click-iT EdU) enables the detection and categorization of dividing cell types in highly dynamic processes in fixed frozen murine tissue sections. Furthermore, a novel open-source image processing pipeline provides high-throughput image acquisition and analysis.

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