Brain Tumor Segmentation

Brain tumor segmentation is the process of identifying and outlining tumor tissue in medical images, most commonly magnetic resonance imaging (MRI), to distinguish it from healthy brain structures. The method analyzes image intensity, texture, contrast, and spatial patterns using image-processing algorithms or machine-learning models that classify pixels or three-dimensional voxels and generate a tumor boundary or volume. In biomedical engineering, segmentation supports tumor characterization, treatment planning, surgical guidance, and monitoring of changes over time. Accurate segmentation can improve quantitative assessment and reduce the time required for manual annotation, while also providing data for evaluating and developing computer-assisted diagnostic systems.

Brain Tumor Segmentation - Related Videos

Research

JoVE EoE - Cancers of the Nervous System

Tumor Treating Fields Application in Human Brain Tumor Models: A Non-invasive Technique to Deliver Alternating Electric Fields to Human Brain for Treating Brain Tumor

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2023

This video demonstrates the application of Tumor Treating Fields or TTFields in human brain tumor models. This non-invasive technique delivers low-intensity alternating electric fields directly to the brain, resulting in inhibition of cell division and subsequent apoptosis.

A Brain Tumor/Organotypic Slice Co-culture System for Studying Tumor Microenvironment and Targeted Drug Therapies

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Cited by 30 •

2015

Many types of human brain tumors are localized to specific regions within the brain and are difficult to grow in culture. This protocol addresses the role of tumor microenvironment and investigates new drug treatments by analyzing fluorescent primary brain tumor cells growing in an organotypic mouse brain slice.

Research

JoVE Journal - Medicine

Digitally Guided Intraoral Segmental Mandibulectomy and Fibula Flap Reconstruction for Locally Invasive Odontogenic Tumors

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2026

This protocol demonstrates a reproducible digitally guided workflow for intraoral segmental mandibulectomy and mandibular reconstruction using a free vascularized fibula flap. The method integrates virtual surgical planning with patient-specific guides to achieve precise tumor resection and scar-free reconstruction.

Establishing a Brain Tumor in an Organotypic Slice Co-culture Model

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2025

This video demonstrates the development of a 3D co-culture system. Mouse brain slices are placed on a membrane, and fluorescently labeled human brain tumor cells are allowed to grow on it. Once the system is ready, it is stained for imaging.

Combination Radiotherapy in an Orthotopic Mouse Brain Tumor Model

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Cited by 9 •

2012

The purpose of this article is to describe the use of an orthotopic glioblastoma model for chemoradiation studies. This article will go though cell processing, implanting, and radiotherapy of the mouse using an intracranial model.

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