3d Tomography Data

3D tomography data are volumetric representations of an object or material reconstructed from measurements collected across multiple viewing angles, allowing internal structures to be analyzed without physical sectioning. Tomographic methods combine these projections with computational reconstruction algorithms to assign spatial information, such as density or attenuation, to voxels throughout the sample. In environmental research, the resulting datasets can reveal soil pore networks, sediment structure, root systems, and the distribution of water or other materials within heterogeneous media. These data support quantitative studies of transport, habitat structure, erosion, and subsurface processes, while enabling repeated, non-destructive analysis of environmental samples.

3d Tomography Data - Related Videos

Research

JoVE Journal - Biology
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3D Printing of Preclinical X-ray Computed Tomographic Data Sets

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Cited by 16 •

2013

Using modern plastic extrusion and printing technologies, it is now possible to quickly and inexpensively produce physical models of X-ray CT data taken in a laboratory. The three -dimensional printing of tomographic data is a powerful visualization, research, and educational tool that may now be accessed by the preclinical imaging community.

Research

JoVE Journal - Biology

Non-invasive 3D-Visualization with Sub-micron Resolution Using Synchrotron-X-ray-tomography

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Cited by 9 •

2008

We used synchrotron X-ray tomography at the European Synchrotron Radiation Facility (ESRF) to non-invasively produce 3D tomographic datasets with a pixel-resolution of 0.7µm. Using volume rendering software, this allows the reconstruction of internal structures in their natural state without the artefacts produced by histological sectioning.

Research

JoVE Journal - Engineering
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Energy Dispersive X-ray Tomography for 3D Elemental Mapping of Individual Nanoparticles

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Cited by 11 •

2016

The use of energy dispersive X-ray tomography in the scanning transmission electron microscope to characterize elemental distributions within single nanoparticles in three dimensions is described.

From Voxels to Knowledge: A Practical Guide to the Segmentation of Complex Electron Microscopy 3D-Data

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Cited by 14 •

2014

The bottleneck for cellular 3D electron microscopy is feature extraction (segmentation) in highly complex 3D density maps. We have developed a set of criteria, which provides guidance regarding which segmentation approach (manual, semi-automated, or automated) is best suited for different data types, thus providing a starting point for effective segmentation.

Extracting Metrics for Three-dimensional Root Systems: Volume and Surface Analysis from In-soil X-ray Computed Tomography Data

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Cited by 2 •

2016

A methodology for obtaining visual and quantitative root structure information from X-ray computed tomography data acquired in-soil is presented.

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