Fungal Species Identification

Fungal species identification is the process of determining which fungal species is present in a sample, a critical step for understanding biodiversity, ecosystem function, and environmental change. Identification combines macroscopic traits such as colony color and growth pattern with microscopic features, including spore shape and reproductive structures, and may be confirmed through DNA-based methods such as barcode sequencing. In environmental research, these approaches characterize fungi in soil, water, air, plants, and built environments, helping assess decomposition, nutrient cycling, plant associations, contamination, and ecological health. Accurate identification also supports monitoring of invasive or pathogenic fungi and improves interpretation of microbial community data.

Fungal Species Identification - Related Videos

Research

JoVE Journal - Biology
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DNA-based Fish Species Identification Protocol

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Cited by 9 •

2010

This publication describes how to use the Agilent Fish Species Identification System to identify the species of a fish by extracting DNA and performing PCR and RFLP analysis.

A 1.5 Hour Procedure for Identification of Enterococcus Species Directly from Blood Cultures

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Cited by 15 •

2011

A rapid protocol for the direct identification of Enterococcus faecalis and other Enterococcus species from a positive blood culture using a Peptide Nucleic Acid fluorescent in situ hybridization assay (PNA FISH).

Education

JoVE Lab Manual - Biology

Microbial and Fungal Diversity - Student Protocol

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2019

Examining Microbial Colony Structures ExpandTo begin, collect your allocated culture plates and then remove the Parafilm and lid from one of them. Place the uncovered plate under a dissecting microscope and then observe the individual communities within each quadrant of the plate. As the colonies are identified, fill out the observed colony properties in the appropriate column in the table. Click Here to download Table 1 Then, repeat the observations for each of the other two bacterial species.

Microbial and Fungal Diversity - Concepts

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2019

Bacteria and fungi are two highly diverse groups of organisms that can have significant beneficial or detrimental impacts on human health. For this reason, it is important to understand and distinguish between individual species of these groups. As you will recall, biological taxonomists group organisms based on their phylogenetic relatedness. The three domains of life, Bacteria, Archaea, and Eukaryota segregate life into three distinct groupings. While all bacteria fall within the domain...

Live-cell Video Microscopy of Fungal Pathogen Phagocytosis

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Cited by 22 •

2013

We describe methods for live-cell video microscopy of Candida albicans phagocytosis by macrophages. These methods enable stage-specific analysis of macrophage migration, recognition, engulfment and phagosome maturation and reveal novel aspects of phagocytosis.

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