Rectal Microorganism Colony Count

Rectal microorganism colony count is a microbiological method for estimating the number of viable microorganisms present in a rectal specimen, helping characterize intestinal microbial burden and identify clinically relevant changes. In a typical culture-based workflow, a measured sample is placed on appropriate growth media, incubated under conditions that support the target organisms, and the resulting colonies are counted as colony-forming units, with dilution factors used to calculate the concentration in the original specimen. This measurement can support investigation of gastrointestinal infection, antimicrobial effects, colonization, and microbial imbalance, while providing a quantitative outcome for clinical studies and laboratory research.

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Research

JoVE EoE - Drosophila melanogaster (fruit fly)

Counting Colony Forming Units (CFUs): Quantifying Bacteria from Fly Bodies

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2023

Drosophila microbiota impacts the animal's development, immunity and physiology. This video describes a method to quantify bacteria from flies by determining the colony forming units from whole body preparations. The featured protocol demonstrates the technique with flies, reared under gnotobiotic conditions using four bacterial species.

Education

JoVE Science Education - Clinical Skills

Male Rectal Exam

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2023

Source: Joseph Donroe, MD, Internal Medicine and Pediatrics, Yale School of Medicine, New Haven, CT While its usefulness in cancer screening is debated, the male rectal examination remains an important part of the physical exam. The exam is indicated in selected patients with lower urinary tract symptoms, urinary and/or fecal incontinence or retention, back pain, anorectal symptoms, abdominal complaints, trauma patients, unexplained anemia, weight loss, or bone pain. There are no absolute...

Povidone Iodine Rectal Preparation at Time of Prostate Needle Biopsy is a Simple and Reproducible Means to Reduce Risk of Procedural Infection

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Cited by 5 •

2015

Here, we present a protocol for use at the time of transrectal ultrasound guided prostate needle biopsy (TRUS PNB) that is a simple and cost-effective means to reduce infections following the procedure.

Visualizing Soil Microorganisms via the Contact Slide Assay and Microscopy

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2023

Source: Laboratories of Dr. Ian Pepper and Dr. Charles Gerba - The University of Arizona Demonstrating Author: Bradley Schmitz Soil comprises the thin layer at the earth’s surface, containing biotic and abiotic factors that contribute to life. The abiotic portion includes inorganic particles ranging in size and shape that determine the soil’s texture. The biotic portion incorporates plant residues, roots, organic matter, and microorganisms. Soil microbe abundance and diversity is expansive, as...

Procedure for Adaptive Laboratory Evolution of Microorganisms Using a Chemostat

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Cited by 11 •

2016

Here, we present a protocol to obtain adaptive laboratory evolution of microorganisms under conditions using chemostat culture. Also, genomic analysis of the evolved strain is discussed.

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