Markus Hafner Howard Hughes Medical Institute, Laboratory of RNA Molecular Biology Rockefeller University Biography Publications Institution JoVE Articles Markus Hafner has not added a biography. If you are Markus Hafner and would like to personalize this page please email our Author Liaison for assistance. Publications The Viral and Cellular MicroRNA Targetome in Lymphoblastoid Cell Lines PLoS Pathogens. Jan, 2012 | Pubmed ID: 22291592 Identification of RNA-protein Interaction Networks Using PAR-CLIP Wiley Interdisciplinary Reviews. RNA. Dec, 2011 | Pubmed ID: 22213601 Viral MicroRNA Targetome of KSHV-infected Primary Effusion Lymphoma Cell Lines Cell Host & Microbe. Nov, 2011 | Pubmed ID: 22100165 RNA Targets of Wild-type and Mutant FET Family Proteins Nature Structural & Molecular Biology. Dec, 2011 | Pubmed ID: 22081015 New Insights in the Mechanism of MicroRNA-mediated Target Repression Nature Structural & Molecular Biology. Nov, 2011 | Pubmed ID: 22056803 Genome-wide Identification of MicroRNA Targets in Human ES Cells Reveals a Role for MiR-302 in Modulating BMP Response Genes & Development. Oct, 2011 | Pubmed ID: 22012620 RNA-ligase-dependent Biases in MiRNA Representation in Deep-sequenced Small RNA CDNA Libraries RNA (New York, N.Y.). Sep, 2011 | Pubmed ID: 21775473 Integrative Regulatory Mapping Indicates That the RNA-binding Protein HuR Couples Pre-mRNA Processing and MRNA Stability Molecular Cell. Aug, 2011 | Pubmed ID: 21723170 Small RNA Sequencing and Functional Characterization Reveals MicroRNA-143 Tumor Suppressor Activity in Liposarcoma Cancer Research. Sep, 2011 | Pubmed ID: 21693658 MicroRNA Sequence and Expression Analysis in Breast Tumors by Deep Sequencing Cancer Research. Jul, 2011 | Pubmed ID: 21586611 Deep Sequencing of Small RNAs Specifically Associated with Arabidopsis AGO1 and AGO4 Uncovers New AGO Functions The Plant Journal : for Cell and Molecular Biology. Jul, 2011 | Pubmed ID: 21457371 Combined Characterization of MicroRNA and MRNA Profiles Delineates Early Differentiation Pathways of CD133+ and CD34+ Hematopoietic Stem and Progenitor Cells Stem Cells (Dayton, Ohio). May, 2011 | Pubmed ID: 21394831 MicroRNAs MiR-17, MiR-20a, and MiR-106b Act in Concert to Modulate E2F Activity on Cell Cycle Arrest During Neuronal Lineage Differentiation of USSC PloS One. 2011 | Pubmed ID: 21283765 Transcriptome-wide Identification of RNA-binding Protein and MicroRNA Target Sites by PAR-CLIP Cell. Apr, 2010 | Pubmed ID: 20371350 Absolute Quantification of MicroRNAs by Using a Universal Reference RNA (New York, N.Y.). Dec, 2009 | Pubmed ID: 19861428 MiRNA in Situ Hybridization in Formaldehyde and EDC-fixed Tissues Nature Methods. Feb, 2009 | Pubmed ID: 19137005 DGCR8-dependent MicroRNA Biogenesis is Essential for Skin Development Proceedings of the National Academy of Sciences of the United States of America. Jan, 2009 | Pubmed ID: 19114655 Molecular Characterization of Human Argonaute-containing Ribonucleoprotein Complexes and Their Bound Target MRNAs RNA (New York, N.Y.). Dec, 2008 | Pubmed ID: 18978028 Displacement of Protein-bound Aptamers with Small Molecules Screened by Fluorescence Polarization Nature Protocols. 2008 | Pubmed ID: 18388939 Identification of MicroRNAs and Other Small Regulatory RNAs Using CDNA Library Sequencing Methods (San Diego, Calif.). Jan, 2008 | Pubmed ID: 18158127 Inhibition of Cytohesins by SecinH3 Leads to Hepatic Insulin Resistance Nature. Dec, 2006 | Pubmed ID: 17167487 PAR-CliP - A Method to Identify Transcriptome-wide the Binding Sites of RNA Binding Proteins Markus Hafner1, Markus Landthaler2, Lukas Burger3, Mohsen Khorshid3, Jean Hausser4, Philipp Berninger4, Andrea Rothballer1, Manuel Ascano1, Anna-Carina Jungkamp2, Mathias Munschauer2, Alexander Ulrich1, Greg S. Wardle1, Scott Dewell5, Mihaela Zavolan3, Thomas Tuschl1 1Howard Hughes Medical Institute, Laboratory of RNA Molecular Biology, Rockefeller University, 2Berlin Institute for Medical Systems Biology, Max-Delbrück-Center for Molecular Medicine, 3Biozentrum der Universität Basel and Swiss Institute of Bioinformatics (SIB), 4Biozentrum der Universität Basel and Swiss Institute of Bioinformatics (SIB), 5Genomics Resource Center, Rockefeller University JoVE 2034 Biology
PAR-CliP - A Method to Identify Transcriptome-wide the Binding Sites of RNA Binding Proteins Markus Hafner1, Markus Landthaler2, Lukas Burger3, Mohsen Khorshid3, Jean Hausser4, Philipp Berninger4, Andrea Rothballer1, Manuel Ascano1, Anna-Carina Jungkamp2, Mathias Munschauer2, Alexander Ulrich1, Greg S. Wardle1, Scott Dewell5, Mihaela Zavolan3, Thomas Tuschl1 1Howard Hughes Medical Institute, Laboratory of RNA Molecular Biology, Rockefeller University, 2Berlin Institute for Medical Systems Biology, Max-Delbrück-Center for Molecular Medicine, 3Biozentrum der Universität Basel and Swiss Institute of Bioinformatics (SIB), 4Biozentrum der Universität Basel and Swiss Institute of Bioinformatics (SIB), 5Genomics Resource Center, Rockefeller University JoVE 2034 Biology