Ripley's K Analysis

Ripley’s K analysis is a spatial point-pattern method that quantifies how biological objects, such as cells, organisms, or tissue features, are distributed across a study area. It calculates the cumulative number of neighboring points within increasing distances of each point, corrects for sampling density and edge effects, and compares the result with a random spatial distribution. Values above the random expectation indicate clustering, whereas lower values suggest spatial dispersion or inhibition at particular scales. In biology, this multiscale analysis helps characterize population structure, cell organization, species interactions, and tissue architecture, providing quantitative evidence for spatial processes that may be missed by single-distance measurements.

Ripley's K Analysis - Related Videos

Research

JoVE Journal - Cancer Research

Phospho Flow Cytometry with Fluorescent Cell Barcoding for Single Cell Signaling Analysis and Biomarker Discovery

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Cited by 29 •

2018

Here, a protocol for medium- to high-throughput analysis of protein phosphorylation events at the cellular level is presented. Phospho flow cytometry is a powerful approach to characterize signaling aberrations, identify and validate biomarkers, and assess pharmacodynamics.

Research

JoVE Journal - Biology
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A Neuronal and Astrocyte Co-Culture Assay for High Content Analysis of Neurotoxicity

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Cited by 46 •

2009

This article describes a novel protocol and reagent set designed for sensitive measurement of neurotoxic effects of compounds and treatments on co-cultures of neurons and astrocytes using high content analysis. Results demonstrate that high content analysis represents an exciting novel technology for neurotoxicity assessment.

Automated Analysis of Intracellular Phenotypes of Salmonella Using ImageJ

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Cited by 3 •

2022

Salmonella invades and replicates inside intestinal epithelial cells both in Salmonella-specific vacuoles and free in the cytosol (hyper-replication). A high-throughput fluorescence microscopy-based protocol is described here to quantify the intracellular phenotypes of Salmonella by two complementary image analyses through ImageJ, reaching single-cell resolution and scoring.

Quantification of Hydrogen Concentrations in Surface and Interface Layers and Bulk Materials through Depth Profiling with Nuclear Reaction Analysis

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Cited by 21 •

2016

We illustrate the application of 1H(15N,αγ)12C resonant nuclear reaction analysis (NRA) to quantitatively evaluate the density of hydrogen atoms on the surface, in the volume, and at an interfacial layer of solid materials. The near-surface hydrogen depth profiling of a Pd(110) single crystal and of SiO2/Si(100) stacks is described.

High-throughput Imaging and Analysis Workflow for Evaluating Skin Cell Phenotypes and Proliferation States in Tissue Samples

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Cited by 1 •

2025

The combination of iterative-bleaching-extends-multiplexity (IBEX) and a commercial nucleotide labeling assay (Click-iT EdU) enables the detection and categorization of dividing cell types in highly dynamic processes in fixed frozen murine tissue sections. Furthermore, a novel open-source image processing pipeline provides high-throughput image acquisition and analysis.

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