Rpegen Matlab Platform

Rpegen MATLAB Platform is a MATLAB-based computational environment for organizing, processing, and analyzing biological data, helping researchers translate experimental measurements into interpretable results. It uses MATLAB’s numerical-computing and visualization capabilities to apply reproducible data workflows, mathematical operations, and graphical analysis to user-supplied datasets. In biology, such a platform can support quantitative investigation, comparison of experimental conditions, and presentation of results, while reducing repetitive manual processing. Its value depends on the quality of the input data, the analytical procedures selected, and appropriate interpretation of model outputs, making documentation and validation important for reliable research conclusions.

Rpegen Matlab Platform - Related Videos

Research

JoVE Journal - Biology

Nitroreductase/Metronidazole-Mediated Ablation and a MATLAB Platform (RpEGEN) for Studying Regeneration of the Zebrafish Retinal Pigment Epithelium

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Cited by 5 •

2022

This protocol describes the methodology to genetically ablate the retinal pigment epithelium (RPE) using a transgenic zebrafish model. Adapting the protocol to incorporate signaling pathway modulation using pharmacological compounds is extensively detailed. A MATLAB platform for quantifying RPE regeneration based on pigmentation was developed and is presented and discussed.

Education

JoVE Core - Statistics

Introduction to MATLAB

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2025

MATLAB stands for Matrix Laboratory. MathWorks developed MATLAB as a multi-paradigm numerical computing environment and proprietary programming language. It has evolved significantly over the years to become a tool utilized by engineers, scientists, and mathematicians for various tasks, including matrix calculations, developing algorithms, data analysis, and visualization. MATLAB's applications span various industries and disciplines. It's used in image and signal processing, communications,...

A Novel Stretching Platform for Applications in Cell and Tissue Mechanobiology

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Cited by 6 •

2014

We present in this article a novel stretching platform that can be used to investigate single cell responses to complex anisotropic biaxial mechanical deformation and quantify the mechanical properties of biological tissues.

The Water Maze with Platform Relocation: A Method to Assess Working Memory

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2023

In this video, we describe the Morris water maze test with platform relocation, a navigational task used to study working memory in rodents.

PIPEMAT-RS: Development and Validation of a Standardized MATLAB Pipeline for Resting-State EEG Preprocessing

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Cited by 3 •

2025

This protocol presents PIPEMAT-RS, a standardized MATLAB-based preprocessing pipeline for resting-state EEG data. It ensures artifact removal, improves signal quality, and enhances data reproducibility across studies. The pipeline automates key preprocessing steps, including filtering, independent component analysis (ICA), and artifact classification, facilitating consistent and reliable EEG analysis for neurophysiological research.

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