Gel-clot Assay

The gel-clot assay is a biological test used to detect bacterial endotoxins, especially lipopolysaccharides from Gram-negative bacteria, in pharmaceutical products and biological samples. It relies on a coagulation cascade in horseshoe crab amebocyte lysate: when endotoxin activates Factor C, downstream enzymes convert a soluble coagulogen into an insoluble gel. After incubation, formation or absence of a firm clot indicates whether endotoxin exceeds a defined limit, while serial sample dilutions can support semi-quantitative assessment. This straightforward method helps evaluate pyrogen control, release injectable medicines, and monitor the safety of vaccines, medical devices, and laboratory reagents.

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JoVE EoE - Assay Techniques

Gel-Clot Limulus Amoebocyte Lysate Assay: A Method for Bacterial Endotoxin Detection in Nanoparticle Formulations

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2025

This video describes a gel-clot assay to determine the presence of bacterial endotoxins in nano-formulations using Limulus Amoebocyte Lysate derived from the blood cells of horseshoe crabs. The assay helps test for endotoxin contamination of pharmaceutical products, including nano-based formulations.

Optimized Fibrin Gel Bead Assay for the Study of Angiogenesis

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Cited by 166 •

2007

This video demonstrates the protocol of an in vitro angiogenesis assay that recapitulates several stages of angiogenesis. Time-lapse images of sprouting, lumen formation, branching and anastomosis - key features of angiogenesis - are shown.

Polyacrylamide Gels for Invadopodia and Traction Force Assays on Cancer Cells

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Cited by 9 •

2015

Mechanical rigidity in the tumor microenvironment plays a crucial role in driving malignant behavior by increasing invadopodia activity and actomyosin contractility. Using polyacrylamide gels (PAAs), invadopodia and traction force assays can be utilized to study the invasive and contractile properties of cancer cells in response to matrix rigidity.

UV-Visible Spectroscopy for Monitoring Fibrin Clot Formation

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2025

This video demonstrates the use of a UV-visible spectrophotometer for monitoring insoluble fibrin clot formation as a function of the change in the solution turbidity. The UV-visible spectrophotometer measures the solution’s absorbance over time, which represents the turbidity change due to the insoluble fibrin clot formation.

An Enzymatic Method to Rescue Mesenchymal Stem Cells from Clotted Bone Marrow Samples

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Cited by 2 •

2015

Mesenchymal stem cells are usually obtained from bone marrow and require expansion culture. When samples clot before processing, a protocol using the (enzymatic) thrombolytic drug urokinase can be applied to degrade the clot. Thus, cells are released and available for expansion culture. This protocol provides a rapid and inexpensive alternative to resampling.

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