Translesion Synthesis

Translesion synthesis (TLS) is a DNA damage-tolerance process that allows cells to replicate DNA containing lesions that would otherwise stall the replication machinery. When a replicative DNA polymerase encounters damaged bases or other distortions, specialized translesion polymerases are recruited to the stalled replication fork and insert nucleotides across the lesion, often with lower accuracy than normal polymerases; replication can then resume. TLS helps preserve genome duplication and cell survival after damage, but its error-prone activity can introduce mutations. Studying TLS clarifies mutagenesis, genome stability, disease mechanisms, and potential strategies for targeting DNA-damage responses in cancer.

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Translesion DNA Polymerases

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2020

Translesion (TLS) polymerases rescue stalled DNA polymerases at sites of damaged bases by replacing the replicative polymerase and installing a nucleotide across the damaged site. Doing so, TLS allows additional time for the cell to repair the damage before resuming regular DNA replication. TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...

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JoVE Science Education - Engineering

Hydrogel Synthesis

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2023

Source: Amber N. Barron, Ashlea Patterson, and Taylor D. Sparks, Department of Materials Science and Engineering, The University of Utah, Salt Lake City, UT Hydrogels are a versatile class of cross-linked polymers produced through relatively simple procedures and with generally inexpensive materials. They can be formed from solution and involve a polymer backbone formed from monomer reagents, an initiator which makes the polymer reactive and a crosslinking species which binds the polymer chains...

Solid Phase Synthesis

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2023

Source: Vy M. Dong and Diane Le, Department of Chemistry, University of California, Irvine, CA Merrifield's solid-phase synthesis is a Nobel Prize winning invention where a reactant molecule is bound on a solid support and undergoes successive chemical reactions to form a desired compound. When the molecules are bound to a solid support, excess reagents and byproducts can be removed by washing away the impurities, while the target compound remains bound to the resin. Specifically, we will...

Synthesis and Decomposition Reactions

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2020

Synthesis and decomposition are two types of redox reactions. Synthesis means to make something, whereas decomposition means to break something. The reactions are accompanied by chemical and energy changes. Synthesis Reactions Synthesis reactions are also called combination reactions. It is a reaction in which two or more substances combine to form a complex substance. Synthesis reactions are generally represented as: A + B → AB or A + B → C. The formation of nitrogen dioxide is a synthesis...

Transfer RNA Synthesis

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2020

One of the unique features of tRNA is the presence of modified bases. In some tRNAs, modified bases account for nearly 20% of the total bases in the molecule. Altogether, these unusual bases protect the tRNA from enzymatic degradation by RNases. Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...

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