Clinical Sample Analysis

Clinical sample analysis is the systematic examination of patient-derived specimens, such as blood, swabs, or tissue, to measure biological markers and identify evidence of disease. In immunology and infection research, samples are collected under controlled conditions, processed to isolate relevant components, and tested using methods such as immunoassays, microscopy, culture, or molecular detection, with appropriate controls supporting reliable interpretation. These analyses can reveal pathogen presence, immune-cell activity, antibody responses, or inflammatory signals. They support diagnosis, disease monitoring, treatment evaluation, epidemiological surveillance, and research into host-pathogen interactions, while careful sample handling and standardized workflows improve result quality and comparability.

Clinical Sample Analysis - Related Videos

Research

JoVE Journal - Immunology and Infection
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Determining the Phagocytic Activity of Clinical Antibody Samples

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Cited by 33 •

2011

We present a high-throughput flow cytometric assay to determine the phagocytic activity of antigen-specific antibodies from clinical samples, utilizing fluorescent antigen-coated beads and a monocytic cell line expressing multiple Fc receptors—providing receptor usage and phagocytic activity determinations in a standardized and reproducible fashion for any antigen of interest.

Research

JoVE Journal - Medicine
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Unbiased Deep Sequencing of RNA Viruses from Clinical Samples

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Cited by 50 •

2016

This protocol describes a rapid and broadly applicable method for unbiased RNA-sequencing of viral samples from human clinical isolates.

Generating Whole Bacterial Genomes from Clinical Samples using a Target Enrichment Workflow

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Cited by 1 •

2025

Here, we present a protocol to enable whole-genome sequencing of bacterial sexually transmitted infections from clinical samples using target enrichment. This novel, syndromic panel-based method overcomes challenges of abundant human DNA and low bacterial loads, facilitating genomic surveillance for Chlamydia trachomatis, Neisseria gonorrhoeae, Treponema pallidum, and Mycoplasma genitalium.

Research

JoVE Journal - Medicine

Optimized LC-MS/MS Method for the High-throughput Analysis of Clinical Samples of Ivacaftor, Its Major Metabolites, and Lumacaftor in Biological Fluids of Cystic Fibrosis Patients

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Cited by 18 •

2017

Ivacaftor and ivacaftor-lumacaftor combination are two new CF drugs. However, there is still a dearth of understanding on their PK/PD and pharmacology. We present an optimized HPLC-MS technique for the simultaneous analysis of ivacaftor and its major metabolites, and lumacaftor.

Sample Preparation for Endopeptidomic Analysis in Human Cerebrospinal Fluid

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Cited by 2 •

2017

A method for mass spectrometric analysis of endogenous peptides in human cerebrospinal fluid (CSF) is presented. By employing molecular weight cut-off filtration, chromatographic pre-fractionation, mass spectrometric analysis and a subsequent combination of peptide identification strategies, it was possible to expand the known CSF peptidome nearly ten-fold compared to previous studies.

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