Viral Ultrastructure

Viral ultrastructure is the nanoscale organization of a virus, including its genome, capsid, envelope, and associated surface proteins, and it helps explain how viral particles assemble, recognize host cells, and deliver genetic material. Researchers characterize these features primarily with electron microscopy and cryo-electron microscopy, which use electron scattering or vitrified specimens to resolve particle shape, symmetry, dimensions, and structural components beyond the resolution of light microscopy. Ultrastructural analysis supports virus classification, clarifies entry and maturation mechanisms, and guides studies of host-pathogen interactions. It also informs antiviral development, vaccine design, and the engineering of viral vectors for research and therapeutic applications.

Viral Ultrastructure - Related Videos

Research

JoVE EoE - Neuroimaging

Ultrastructural Analysis of a Mouse Brain Section Using Transmission Electron Microscopy

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2025

Source: Lutz, D., et.al. Assessment of Ultrastructural Neuroplasticity Parameters After In Utero Transduction of the Developing Mouse Brain and Spinal Cord. J. Vis. Exp. (2019).This video demonstrates the preparation and transmission electron microscopy (TEM) analysis of a brain section from a mouse pup. The protocol starts with osmium tetroxide-fixed tissue embedded in resin, followed by precise trimming to isolate the region of interest and ultramicrotomy to produce semithin and ultrathin...

Capsule-Based Negative Staining of Virus Samples on TEM Grids: A Heavy Metal Staining Technique to Visualize the Ultrastructure of Enveloped Viruses

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2025

In this video, we demonstrate the negative staining of enveloped virus samples using a processing capsule within the biocontainment environment. The negatively stained viruses can be visualized using transmission electron microscopy to investigate viral structure and morphology with nanometer resolution.

Utilization of Capsules for Negative Staining of Viral Samples within Biocontainment

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Cited by 3 •

2017

This protocol provides instruction for negative staining virus samples which can easily be used in BSL-2, -3, or -4 laboratories. It includes the use of an innovative processing capsule, which protects the transmission electron microscopy grid and provides the user easier handling in the more turbulent environments within biocontainment.

Research

JoVE Journal - Immunology and Infection
Free Sample

Using a Pan-Viral Microarray Assay (Virochip) to Screen Clinical Samples for Viral Pathogens

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Cited by 83 •

2011

The Virochip is a pan-viral microarray designed to simultaneously detect all known viruses as well as novel viruses on the basis of conserved sequence homology. Here we demonstrate how to run a Virochip assay to analyze clinical samples for the presence of both known and unknown viruses.

Concentration and Purification of Viral Particles

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2026

Source: Fricano-Kugler, C. J., et al. Designing, Packaging, and Delivery of High Titer CRISPR Retro and Lentiviruses via Stereotaxic Injection. J. Vis. Exp. (2016).This video demonstrates the step-by-step process for concentrating and purifying lentiviral particles from a mixed suspension containing host cell debris. The procedure utilizes centrifugation, filtration, and PEG-salt precipitation to isolate viral particles while removing soluble impurities. The final product is resuspended in a...

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