Fixed Tissue Slices

Fixed tissue slices are thin sections of biological tissue preserved with chemical or physical fixation so their cellular architecture and molecular components can be examined outside the living organism. During fixation, agents such as aldehydes form stabilizing cross-links among cellular molecules, after which the tissue is embedded, sectioned, and often stained or labeled for microscopic analysis. In biochemistry, these preparations help researchers localize proteins, nucleic acids, and other targets within intact tissue while retaining spatial context, supporting studies of normal physiology, disease-associated changes, and tissue-specific molecular organization. Because fixation can alter molecular accessibility, sample preparation must match the intended assay.

Fixed Tissue Slices - Related Videos

Research

JoVE EoE - Neuroimaging

Visualizing Astrocyte Morphology Using Fluorescent Dye Iontophoresis in a Fixed Mouse Brain Slice

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2025

Source: Moye, S. L., et.al. Visualizing Astrocyte Morphology Using Lucifer Yellow Iontophoresis. J. Vis. Exp. (2019). This video demonstrates the use of fluorescent dye iontophoresis to study astrocyte morphology in fixed brain slices. It details the piercing of the astrocyte soma with an electrode to deliver an anionic, hydrophilic dye into the cytoplasm under a low-voltage current, enabling the dye to diffuse and label the soma and branches. Confocal microscopy is then used to visualize the...

Formalin-Fixed Paraffin Embedded (FFPE) Tissue Preservation: A Method for Studying Tissue Morphology

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2023

The following video describes how to preserve morphology of a tissue with formalin fixation and paraffin embedding.

Research

JoVE Journal - Biology
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Proteomic Sample Preparation from Formalin Fixed and Paraffin Embedded Tissue

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Cited by 50 •

2013

Archival formalin fixed and paraffin embedded (FFPE) clinical samples are valuable material for investigation of diseases. Here we demonstrate a sample preparation workflow allowing in-depth proteomic analysis of microdissected FFPE tissue.

TTC Staining of Rat Brain Tissue Slices: A Staining Procedure to Differentiate Viable and Necrotic Tissue in Tissue Slices After Ischemia-Reperfusion Injury

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2025

This video describes the 2,3,5-triphenyl-2H-tetrazolium chloride staining procedure to visualize rat brain tissue slices and differentiate viable and damaged tissue following middle cerebral artery occlusion and reperfusion.

Cerebellum Dissection and Slice Preparation: A Method to Generate Tissue Slices from Mouse Cerebellum

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2025

This video describes a method to generate tissue slices from the mouse cerebellum. The cerebellar slices can be used for organotypic culturing that provides insights into neurodevelopmental mechanisms, including myelination dynamics.

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