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Method Article

Isolation of Cerebral Capillaries from Human Brain: An Optimized Method to Extract Cerebral Capillaries from Human Brain Tissue

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July 8th, 2025

In This Article

Abstract

Source: Hartz, A. M. S. et al. Isolation of Cerebral Capillaries from Fresh Human Brain Tissue. J. Vis. Exp. (2018)

This video presents the isolation of cerebral capillaries from a fresh human brain tissue. The isolated capillaries can then be used to generate an ex vivo blood brain barrier model.

Protocol

All procedures involving human participants have been performed in compliance with the institutional, national, and international guidelines for human welfare and have been reviewed by the local institutional review board.

1. Brain Sample Preparation

NOTE: Figure 1A shows the workflow chart of the entire isolation procedure described below. Human brain tissue can stem from any part of the cortex and can be used fresh or frozen. Frozen brain tissue can be thawed at room temperature (no buffer; ~30 min for 10 g). To achieve comparable results, the brain tissue should....

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Results

Human brain capillary isolation process diagram and microscope setup for tissue examination.
Figure 1: Flowchart for capillary isolation. (A) The pictogram illustrates major steps of the procedure to isolate brain capillaries from fresh human tissue. (B) The picture shows isolated human brain capillaries under a light .......

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Disclosures

No conflicts of interest declared.

Materials

List of materials used in this article
NameCompanyCatalog NumberComments
<strong>Personal Protective Equipment (PPE)</strong>
Diamond Grip Plus Latex Gloves, Microflex MediumVWR, Radnor, PA, USA32916-636PPE
Disposable Protective LabcoatsVWR, Radnor, PA, USA470146-214PPE; due to the nature of the human source material, the use of a disposable lab coat is recommended
Face Shield, disposableThermo Fisher Scientific, Pittsburgh, PA, USA19460102PPE; due to the nature of the human source material, the use of a disposable face shield is recommended
<strong>Safety Materials</strong>
Clavies High-Temperature Autoclave Bags 8 x 12Thermo Fisher Scientific, Pittsburgh, PA, USA01-815-6
Versi Dry Bench Paper 18" x 20"Thermo Fisher Scientific, Pittsburgh, PA, USA14-206-32To cover working areas
VWR Sharps Container SystemsThermo Fisher Scientific, Pittsburgh, PA, USA75800-272For used scalpels
Bleach 8.2% Clorox Germicidal 64 oz.UK Supply Center, Lexington, KY, USA323775
<strong>Equipment</strong>
4 &deg;C RefrigeratorThermo Fisher Scientific, Pittsburgh, PA, USA13-986-148
Accume BASIC AB15 pH MeterThermo Fisher Scientific, Pittsburgh, PA, USAAB15
Heidolph RZR 2102 ControlHeidolph, Elk Grove Village, IL, USA501-21024-01-3
Sorvall LEGEND XTR CentrifugeThermo Fisher Scientific, Pittsburgh, PA, USA75004521
Leica L2 Dissecting MicroscopeLeica Microsystems Inc, Buffalo Grove IL, USAUsed to remove meninges
POLYTRON PT2500 HomogenizerKinematica AG, Luzern, Switzerland9158168
Scale P-403Denver Instrument, Bohemia, NY, USA191392
Standard mini StirThermo Fisher Scientific, Pittsburgh, PA, USA1151050
Thermo-Flasks Liquid Nitrogen DewarThermal Scientific, Mansfiled, TX, USA11-670-4CUsed to freeze the tissue
Voyager Pro Analytical BalanceOHAUS, Parsippany, NJ, USAVP214CN
ZEISS Axiovert MicrocopeCarl Zeiss, Inc Thornwood, NY, USAUsed to check isolated capillaries
<strong>Tools and Glassware</strong>
Finnpipette II Pipette 1-5 mLThermo Fisher Scientific, Pittsburgh, PA, USA21377823T1Wash capillaries off filter
Finnpipette II Pipette 100-1,000 &micro;LThermo Fisher Scientific, Pittsburgh, PA, USA21377821T1Resuspend pellet in BSA
Pipet BoyIntegra, Hudson, NH, USA739658
50 mL Falcon tubes 25/rack - 500/csVWR, Radnor, PA, USA21008-951
EISCO Scalpel BladesThermo Fisher Scientific, Pittsburgh, PA, USAS95938CTo mince brain tissue
PARAFILMVWR, Radnor, PA, USA52858-000To cover beaker and volumetric flask
Thermo Scientific Finntip Pipet Tips 5 mLThermo Fisher Scientific, Pittsburgh, PA, USA21-377-304To wash capillaries off filter
60 mL syringe with Luer-LokThermo Fisher Scientific, Pittsburgh, PA, USABD309653Used with connector ring to filter capillaries
Scalpel Handle #4Fine Science Tools, Foster City, CA, USA10060-13Used for mincing
Dumont Forceps #5Fine Science Tools, Foster City, CA, USA11251-10Used to remove meninges
Potter-Elvehjem Tissue GrinderThomas Scientific, Swedesboro, NJ, USA3.43E+2850 mL volume, clearance: 150-230 &mu;m
Dounce HomogenizerVWR, Radnor PA USA62400-64215 mL volume, clearance: 80-130 &mu;m
Spectra/Mesh Woven Filters (300 &micro;m)Spectrum Laboratories, Rancho Dominguez, CA, USA146424Used to filter capillary suspension to remove any meninges that may be left
pluriStrainers (pore size: 30 &micro;m)pluriSelect Life Science, Leipzig, Germany43-50030-03
Connector RingpluriSelect Life Science, Leipzig, Germany41-50000-03Reuse multiple time
1 L Volumetric FlaskFor preparation of Isolation Buffer
1 L BeakerFor preparation of 1% BSA
Stir BarFor preparation of 1% BSA and Ficoll&reg;
Schott Bottle (60 mL)For preparation of Ficoll&reg;
Ice BucketTo keep everything cold
100 mm Petri dishFor mincing of brain tissue
Tissue Culture Cell ScraperVWR, Radnor, PA, USA89260-222To remove supernatant after centrifugation
<strong>Chemicals</strong>
BSA Fraction V, A-9647Sigma-Aldrich, St. Louis, MO, USAA9647-500gPrepare in DPBS with Ca2+&nbsp;&amp; Mg2+&nbsp;the day before. Avoid bubbles during preparation. Store in the refrigerator. Slowly stir for 10 min before use.
DPBS with Ca<sup>2+</sup>&nbsp;&amp; Mg<sup>2+</sup>HycloneSH30264.FSDPBS - part of the Isolation Buffer
Ficoll PM400Sigma-Aldrich, St. Louis, MO, USAF4375Exact measurement is important here. Weigh out in bottle with stir bar. Shake vigurously after adding DPBS. Keep in the fridge O/N. It will be clear in the morning. Stir gently for 10-15 min before use. Keep on ice until use.
Glucose (D-(+) Dextrose)Sigma-Aldrich, St. Louis, MO, USAG7528Glucose (D-(+) Dextrose) Concentration: 5 mM
Sodium Hydroxide Standard SolutionSigma-Aldrich, St. Louis, MO, USA71474To adjust pH of the DPBS
Sodium PyruvateSigma-Aldrich, St. Louis, MO, USAP2256Concentration: 1 mM

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