Primary Culture of Neurons Isolated from Embryonic Mouse Cerebellum

Summary

Conducting in vitro experiments to reflect in vivo conditions as adequately as possible is not an easy task. The use of primary cell cultures is an important step toward understanding cell biology in a whole organism. The provided protocol outlines how to successfully grow and culture embryonic mouse cerebellar neurons.

Abstract

The use of primary cell cultures has become one of the major tools to study the nervous system in vitro. The ultimate goal of using this simplified model system is to provide a controlled microenvironment and maintain the high survival rate and the natural features of dissociated neuronal and nonneuronal cells as much as possible under in vitro conditions. In this article, we demonstrate a method of isolating primary neurons from the developing mouse cerebellum, placing them in an in vitro environment, establishing their growth, and monitoring their viability and differentiation for several weeks. This method is applicable to embryonic neurons dissociated from cerebellum between embryonic days 12–18.

Introduction

For several decades, cell lines have been widely used as a high throughput tool in preclinical studies and biological research. Cost-effectiveness, fast growth, and reduction of live animal use are some benefits of using these cells. However, genetic alterations and phenotypical changes accumulate after several passages in vitro¹. Misidentification of cell lines and genetic dissimilarity from primary cells can lead to irreproducible experiments and false conclusions^2,3,4,5. Therefore, in spite of some similarities to differentiated cells such as neurons (e.g., neurotransmitters, ion channels, receptors, and other neuron-specific proteins), neuronal cell lines cannot replicate the full phenotype of neurons. Using mature neurons is another option; however, these cells are non-dividing postmitotic cells that are difficult to propagate in culture. Moreover, re-entry into the cell cycle may precipitate apoptosis⁶.

Three-dimensional (3D) cell culture, organotypic slice cultures, and organoid cultures have been developed to provide an environment in which cells can arrange into a 3D form that mimics the in vivo setting. Thus, cell-to-cell communication, migration, invasion of tumor cells into surrounding tissues, and angiogenesis can be studied⁷. However, additional costs of using extra cellular matrix (ECM) proteins or synthetic hydrogels as a bedding, difficulty in imaging, and compatibility with high-throughput screening instruments are considerable drawbacks of 3D cell culturing. A major disadvantage of organotypic tissue slice culture is the use of a large number of animals and the adverse effects of axotomy, which leads to inaccessibility of targets and growth factors for axons, and consequently neuronal death⁸.

Therefore, an alternate approach, which avoids the problems with cell lines, the difficulty of growing mature cells, and complexity of tissues, is in vitro maturation of immature primary cells. Primary cells are derived directly from human or animal tissue and dissociated using enzymatic and/or mechanical methods⁹. The main principles of isolation, seeding, and maintenance in culture medium are similar regardless of the tissue source. However, the trophic factors necessary to promote proliferation and maturation are highly cell specific⁶.

Knowing the ‘birthdate’ of each cerebellar cell type is a prerequisite for designing a primary culture experiment. In general, Purkinje cells (PCs) and the neurons of the cerebellar nuclei (CN), are born before the smaller cells, including interneurons (e.g., basket, stellate cells) and granule cells. In mice, PCs emerge between embryonic day (E)10–E13, whereas CN neurons at approximately E9–E12¹⁰.

Other cerebellar neurons are born much later. For example, in mice, the Golgi subpopulation of interneurons are generated from VZ at (~E14−E18) and the remaining interneurons (basket cell and stellate cells) located in the molecular layer emerge from dividing progenitor cells in the white matter between early postnatal (P)0–P7¹¹. Granule cells are generated from the external germinal zone (EGZ), a secondary germinal zone that is derived from the rostral rhombic lip and goes through terminal division after birth. But before their precursors arise from the rhombic lip from E13–E16, the cells have already migrated rostrally along the pia surface to make a thin layer of cells on the dorsal surface of the cerebellum anlage. Nonneuronal macroglial cells such as astrocytes and oligodendrocytes, which originate from the ventricular neuroepithelium, are born at E13.5−P0 and P0−P7 respectively^{11,12,13,14,15}. Microglia are derived from yolk-sac primitive myeloid progenitor cells between E8–E10 and after invasion into the central nervous system can be detected in the mouse brain by E9¹⁶.

The method presented in this article is based on the one originally developed by Furuya et al. and Tabata et al.^17,18, which was optimized for primary culturing of Purkinje cells derived from Wistar rat cerebella. We have now adapted this method and carefully modified it to study the growth of mouse cerebellar neurons¹⁹. Unlike in our new protocol, cold dissection medium is the main washing buffer used during dissection and dissociation steps before adding seeding medium in Furuya’s protocol¹⁷. This buffer lacks the nutrition, growth factors, and hormones (all in Dulbecco’s modified Eagle medium:nutrient mixture F-12 [DMEM/F12]) that are necessary to support cell growth and survival during the aforementioned steps. In addition, based on our extensive experience with murine primary cerebellar cultures, we have used 500 μL of culture medium in each well (instead of 1 mL) and increased the tri-iodothyronine concentration to 0.5 ng/mL, which improves growth of neuronal cells, in particular those with a Purkinje cell phenotype, and promotes the outgrowth of dendritic branches in culture. The principal method featured in this article can be broadly applied to other small rodents (e.g., squirrels and hamsters) during embryonic development and can be used to study cerebellar neurogenesis and differentiation in the various embryonic stages, which differ between species.

Protocol

All animal procedures were performed in accordance with institutional regulations and the Guide to the Care and Use of Experimental Animals from the Canadian Council for Animal Care and has been approved by local authorities (“the Bannatyne Campus Animal Care Committee”). All efforts were made to minimize the number and suffering of animals used. Adequate depth of anesthesia was confirmed by observing that there was no change in respiratory rate associated with manipulation and toe pinch or corneal reflex.

1. Preparation

NOTE: Schedule the provision of timed pregnant mice, based on the research plan, for post-conception E12–E18. Choice of the timing depends on the desired cell characteristics (see below). Prepare the cover slips and plates at least 2 days before the experiment. Poly-L-ornithine is used as a coating material to enhance cell attachment to the cover slips.

1. Coat the cover slips 2 days before cell isolation.
   1. Place the round cover slips in a 24 well plate, under sterile conditions in a biosafety cabinet. Leave a gap between each cover slip to avoid any contamination.
   2. Add 90 µL of poly-L-ornithine (PLO, 500 µg/mL) to the center of each cover slip. Close the cap and gently place the plate in a 37 °C/5% CO₂ incubator for 2 days.
      NOTE: A greater volume may spill off the cover slips during incubation. The cover slip does not need to be completely covered with PLO after placing a drop. During overnight incubation, PLO distributes equally to the edge of the cover slips.
2. One day before cell isolation, prepare the culture medium I (DMEM/F-12 containing putrescine 100 µM, sodium selenite 30 nM, L-glutamine 3.9 mM, gentamicin 3.5 µg/mL, tri-iodothyronine (T3) 0.5 ng/mL, and N3 supplements [progesterone 4 µM, insulin 20 μg/mL, transferrin 20 mg/mL]) and seeding medium (culture medium I [without N3 and T3] containing 10% fetal bovine serum [FBS]) and store them in 4 °C. Prepare the trypsin working solution (0.25%) in DMEM/F12 and keep it at 4 °C.
   NOTE: The medium compositions are provided in Table 1.
3. On the day of cell isolation, place culture medium I and seeding medium in the incubator at 37 °C.
   NOTE: Before starting the cerebellum isolation, make sure that all the tools and working surfaces are sterile.
4. Wash cover slips.
   1. Take the 24 well plate out of the incubator.
   2. Wash the cover slips in the 24 well plate 3x with double distilled water (DDW) in a biosafety cabinet under sterile conditions. Each time let the cover slips soak in DDW for 5 min before starting aspiration.
   3. Leave the cover slips in a biosafety cabinet for at least 2 h to completely dry.

2. Cerebellum collection

1. Prepare three 10 cm sterile plastic Petri dishes filled with ice-cold 1x phosphate-buffered saline (PBS), 3 Petri dishes filled with ice-cold 1x Hank’s balanced salt solution (HBSS), and approximately 5 Petri dishes filled with ice-cold dissection medium (1x HBSS containing gentamicin 10 μg/mL). Keep them on ice.
2. Anesthetize the E18 CD1 pregnant mouse with 40% isoflurane. Perform cervical dislocation on the mouse. Sterilize the abdomen with 70% ethanol solution.
3. Use a pair of scissors to make a skin incision from the pubic symphysis to the xiphoid process. Then hold the skin with forceps and open the abdominal cavity.
4. Excise the uterine horns with forceps and wash them 3x in the ice-cold 1x PBS on ice.
   NOTE: The following steps should all be conducted on ice to minimize the metabolic rate and prevent tissue and cell damage.

3. Dissecting the cerebellum

1. After the last washing step, using a pair of fine forceps separate the embryos from the uterus in 1x HBSS and transfer them to the ice-cold dissection medium. In the dissection medium, decapitate the embryos with scissors. Place the tissue in a clean dissection medium.
   NOTE: Using a stereomicroscope for microdissection is optional.
2. Hold the skull with fine forceps and cut through the calvarium with a pair of small scissors from the lateral aspect of the skull in a line from the foramen magnum to the external acoustic meatus and inferior border of the orbital cavity.
   NOTE: Taking this step exposes the cranial cavity at the level of the skull base and makes it easier to remove the brain.
3. Using a pair of fine forceps, remove the skull base and peel the skull away from the brain.
4. Carefully remove the meninges on the cerebellum, starting from the lateral surface of the middle cerebellar peduncle and pons.
5. Cut both cerebellar peduncles and separate the cerebellum from the rest of the brain (Figure 1).
6. Immediately place the collected cerebella in a sterile 15 mL conical tube filled with 14 mL of DMEM/F12 on ice.
7. Centrifuge the tube at 1,000 x g, 4 °C for 1 min, 3x. Each time gently remove the supernatant with a pipette and resuspend the pellet in fresh, ice-cold DMEM/F12.
   NOTE: To avoid losing the samples, use the cabinet suction as little as possible.

4. Cerebellum dissociation

1. Add 2 mL of prewarmed (37 °C) trypsin to the pellet from step 3.7 and gently pipet for adequate mixing.
2. Place the tube in a 37 °C water bath for 12 min.
3. After incubation, bring the tube to a biosafety cabinet and add 10 mL of DMEM/F12 to inactivate the trypsin.
4. Centrifuge the mixture at 1,200 x g for 5 min. Discard the supernatant and resuspend the pellet in fresh DMEM/F12. Repeat 3x.
5. Prewet a sterile plastic transfer pipet with DMEM/F12.
6. After washing and the final centrifugation, add 3.5 mL of DNase working solution (1 mL of DNase I stock solution [0.05% DNase + 12 mM MgSO₄ + 1x HBSS] in 500 µL of heat-inactivated FBS and 2 mL of DMEM/F12) to the pellet in the same tube.
7. Triturate the tissue with a pipet at least 30x until the mixture attains a homogenous milky color.

5. Cell collection

1. Add 10 mL of ice-cold DMEM/F12 to the mixture.
2. Centrifuge the sample at 1,200 x g, 4 °C for 5 min.
3. Carefully remove the supernatant without disturbing the pellet.
4. Remove the seeding medium from the incubator.
5. Add 500 µL of prewarmed seeding medium to the pellet and mix it very well using a pipet to resuspend the cells.
6. Count the cells using a hemocytometer.
7. Dilute the cell suspension with the seeding medium to a density of 5 x 10⁵ cells/mL.
8. Under a biosafety cabinet, add 90 µL of the diluted mixture to each well at the center of the cover slip.
   NOTE: Do not load the particles that did not suspend in the DNase.
9. Place the plate in the incubator at 37 °C for 3−4 h.
10. After incubation, add 500 µL of prewarmed culture medium I to each well and place the plate back into the incubator (37 °C).

6. Treatment of the recovered cells

1. After 7 days, replace the old medium with fresh culture medium II (culture medium I supplemented with cytosine arabinoside [Ara-C, 4 μM] and 100 μg/mL bovine serum albumin [BSA]; see Table 1).
   NOTE: This step is critical to avoid growth of nonneuronal cells.
2. Monitor the culture medium once a day. If the pH changes (indicated by a marked change in color, usually yellower), remove half (almost 250 µL) of the old medium from all wells and add 300 µL of prewarmed culture medium I to each of them to avoid nutrient loss.
   NOTE: Phenol red in culture medium is a good indicator of the pH of the medium and activity of the cells. Try to minimize the exposure time of the cells to out of incubator conditions. This prevents any stress that might affect their viability.

7. Cell collection and fixation

NOTE: Depending on the experimental design, the cells can be collected at any day, at any timepoint.

1. Prepare a separate 24 well plate with the corresponding numeric organization and add 100 µL of 4% paraformaldehyde (PFA) to each well.
2. To harvest cells on the desired days (depending on the experimental protocol), gently remove the cover slips from the wells of the original culture plate and place them in the corresponding wells of the PFA-filled plate.
3. Add PFA to the wells to completely immerse the cover slips.
   NOTE: To avoid cell detachment from the cover slip, do not add the PFA directly on the cover slip.
4. Keep the PFA plate at 4 °C for 30−120 min.
5. After incubation, restore the plate to room temperature.
6. Gently wash the cover slips 3x for 5 min with 1x PBS.
7. Proceed to the immunostaining process.
   NOTE: In this study, a fluorescence microscope equipped with a camera was used to capture the images and assembled into montages using an image editing software application.

Results

Based on the different birthdates of neuronal subtypes in the cerebellum, cultures from E12−E18 mouse embryos yielded different cell types. Large projection neurons, such as CN neurons (E9−E12) and PCs (E10−E13), emerged early during cerebellar development. In mice, granule and Golgi cells arose between ~E13–E18 and underwent terminal divisions up to postnatal week 4.

Replacing old medium I with fresh culture medium II at days in vitro (DIV) 7 will eventually prevent glial cell proliferation. ...

Discussion

The use of primary cultures is a well-known method applicable for all types of neurons^17,18,19. In the presented protocol, we explain how to isolate cerebellar neurons and maintain their viability with optimum survival in vitro for a maximum of 3 weeks. Primary culture of cerebellar cells, which were isolated at E15−E18, confirms the collection of three classes of large neurons: PCs, Golgi cells, and CNs. The cell bodies a...

Materials

List of materials used in this article

Name	Company	Catalog Number	Comments
Adobe Photoshop CS5 Version 12	Adobe Inc
Anti-Sodium Channel (SCN)PN4 (Nav1.6)	Sigma	S0438	3 μg/mL
Bovine Serum Albumin	Millipore Sigma	A3608
CALB1	Swant Swiss Antibodies (Polyclonal)	CB38	1/5000 dilution
CALB1	Swant Swiss Antibodies (Monoclonal)	300	1/1000 dilution
Cytosine β-D-arabinofuranoside or Cytosine Arabinoside (Ara-C)	Millipore Sigma	C1768
DNase I from bovine pancreas	Roche	11284932001
Dressing Forceps	Delasco	DF-45
Dulbecco’s Modified Eagle’s Medium (DMEM-F12)	Lonza	12-719F
Fisherbrand Cover Slips: Circles	Fisher Scientific	12-545-81
Gentamicin	Gibco	15710-064
Hanks’ Balanced Salt Solution (HBSS)	Gibco	14185-052
Insulin from bovine pancreas	Millipore sigma	I5500, I6634, I1882, and I4011
Large Scissor	Stoelting	52134-38
L-glutamine	Gibco	25030-081
Metallized Hemacytometer	Hausser Bright-Line	3100
Microdissection Forceps	Merlan	624734
Pattern 5 Tweezer	Dixon	291-9454
Phosphate Buffered Saline (PBS)	Fisher BioReagents	BP399-26
Poly-L-Ornithine	Millipore Sigma	P4638
Progesteron (P4)	Millipore sigma	P8783
PVALB	Swant Swiss Antibodies	235	1/1500 dilution
Samll Scissor	WPI Swiss Scissors, 9cm	504519
Sodium Selenite	Millipore Sigma	S9133
Transferrin	Millipore Sigma	T8158
Tri-iodothyronine (T3)	Millipore Sigma	T2877
Trypsin	Gibco	15090-046
Zeiss Fluorescence microscope	Zeiss	Z2 Imager