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TOPICAL COLLECTIONS

Cell Fate Programming

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Nika Shakiba

Nika Shakiba

University of British Columbia,School of Biomedical Engineering,Vancouver, Canada, V6T 1Z3

Dr. Nika Shakiba is an Assistant Professor in the School of Biomedical Engineering (SBME) at UBC. She received her PhD from the University of Toronto and completed her postdoctoral training in the Synthetic Biology Center at Massachusetts Institute of Technology. Her research program (https://shakiba.bme.ubc.ca) is interested in understanding the social lives of stem cells. Her lab applies a combined systems and synthetic biology approach to reverse- and forward-engineer the competitive interactions between cells in developmental systems. Dr. Shakiba is also a big believer in outreach and mentorship. Beyond her research and teaching, she is passionate about providing equity in mentorship & advice access through her latest project, Advice to a Scientist (https://advicetoascientist.com/).

Collection Overview

Cells are functional units of life that process inputs from their microenvironment – chemical and mechanicals interactions with their neighbors, soluble factors, and with their extracellular matrix – and map these to phenotypic outputs. Efforts to program the behavior of cells has relied in large part to niche engineering approaches, where the microenvironment of the cell is manipulated to control changes in cell proliferation, death, motility, identity, etc. Recent advances with genetic engineering have now opened the door to programming the inner regulatory network of the cell, allowing us to move cells across the Waddington landscape in directs previously thought to be impossible, such as with the conversion of somatic cells to a stem cells state. With growing approaches to cell fate programming, in this collection we explore techniques for both reverse and forward engineering cellular behavior, both at the single cell and population level.

Articles

An Optimized Mouse Embryonic Stem Cell Based Reverse Poly-Transfection Technique for Rapid Exploration of Nucleic Acid Ratios
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An Optimized Mouse Embryonic Stem Cell Based Reverse Poly-Transfection Technique for Rapid Exploration of Nucleic Acid Ratios

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2023

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Abstracts

A human bone marrow 3D model to investigate the dynamics and interactions between resident cells in physiological or tumoral contexts

Sylvain Lefort*1

1Inserm U1052, CNRS UMR5286, Université de Lyon, Centre de Recherche en Cancérologie de Lyon

Utilizing the OptoPlate-96 Platform for Efficient Light-Inducible Gene Expression in Human Cells

Nathan Lord*1,

Matthew Rytel1,

Dmytro Klitchyk1,

Mo Ebrahimkhani*1

1University of Pittsburgh School of Medicine

Generation of human pluripotent stem cell (hPSC)-derived kidney organoids

Josef Penninger*1,

Nicolas Werschler*1

1University of British Columbia

Generation of human pluripotent stem cell (hPSC)-derived blood vessel organoids

Josef Penninger*1,

Nicolas Werschler*1

1University Of British Columbia