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TOPICAL COLLECTIONS

Next Generation Pathology – High Dimensional Methods for Tissue Analysis

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Guest Editors

James Ziai

James Ziai

Genentech, Inc.

James Ziai is a Senior Pathologist at Genentech, Inc. where he supports immuno-oncology drug discovery and serves as a Scientific Lead for non-optical, tissue-based multiplex assay development in the Translational Tissue Technology lab. He is board certified in Anatomic Pathology, Clinical Pathology, Hematopathology. and Molecular Pathology and is a Fellow of the College of American Pathologists. He completed his residency in Anatomic and Clinical Pathology at Yale New Haven Hospital and his fellowships in hematopathology and molecular pathology at Stanford Hospital and Clinics and Yale New Hospital, respectively. At Genentech, he provides pathology expertise to support pre-clinical and clinical drug development programs in cancer immunology and has led efforts for early adoption of non-optical multiplexing methods including imaging mass cytometry, multiplex ion beam imaging, and Nanostring’s Digital Spatial Profiling (DSP) technology.

Richard Torres

Richard Torres

Yale University School of Medicine

Dr. Torres is an Assistant Professor of Laboratory Medicine at the Yale School of Medicine and a hematopathologist with clinical practice focus in flow cytometry, pathology informatics, serologic testing, and molecular diagnostics of hematopoietic diseases including Medical Directorship of the Flow Cytometry Laboratory and the Immunology Laboratory at Yale-New Haven Hospital. His research focus encompasses engineering and medicine, applying engineering advances to diagnostics, including the development and practical application of non-destructive three-dimensional reconstruction histology for clinical and investigative use.

Collection Overview

In recent years, technological advances in pathology and tissue diagnostics have occurred at unprecedented rates. Novel methods for fluorescence-based as well as non-optical multiplexed immunohistochemistry, in situ hybridization, microscopy, and machine learning can revolutionize tissue-based diagnosis and will be central to the realization of personalized medicine. For instance, new multiplexed immunohistochemistry methods (e.g. imaging mass cytometry, multiplex ion beam imaging, and Nanostring Digital Spatial Profiling) promise four logs of dynamic range compared to two from traditional immunohistochemistry as well as the ability to spatially characterize over 50 biomarkers simultaneously. Advances in microscopy have also enabled non-destructive, slide-free examination of tissue samples with three dimensional image construction preserving tissue for downstream assays. They potentiate emerging tools for comprehensive, computerized analysis of digital histology, which could markedly improve prognostic or diagnostic methods that previously relied on subjective interpretation of traditional, two dimensional transmitted light histology.

While promising, these technologies require significant technical experience and knowledge to implement. Furthermore, their evolution has outpaced the ability to generate consensus guidelines on their validation and use. As such, increased visibility of these methods, shared by experienced users, can help in advancing dialogue around their implementation, accelerating standardization, ultimately to improve patient care. This collection will highlight methods of “high dimensional” pathology that could be transformative for histologic interpretation, biomarker science, and image analysis and includes methods for optical and non-optical multiplexed immunohistochemistry, three dimensional microscopy, generation of standards for immunohistochemistry platform validation, and machine learning-based image analysis.

Articles

Automated Dissection Protocol for Tumor Enrichment in Low Tumor Content Tissues
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Automated Dissection Protocol for Tumor Enrichment in Low Tumor Content Tissues

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Cited by 2

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2021

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Abstracts

Synthetic Antigen Controls for Immunohistochemistry

Kathy Hotzel1,

Charles Jones1,

Linda Rangell1,

Charles Havnar1,

Franklin Peale*1,

Carmina Espiritu1

1Genentech, Inc.