Automated Fluorescent Microscope

An automated fluorescent microscope is an imaging system that uses fluorescence to detect and visualize specific molecules, structures, or cells while reducing manual operation and improving measurement consistency. It illuminates a fluorescent sample with selected wavelengths, captures emitted light through optical filters and a camera, and uses programmed stages or focusing routines to acquire images across defined positions. In biochemistry, these microscopes support fluorescence-based assays, protein localization studies, cell analysis, and high-throughput screening. Automated image acquisition and quantitative analysis can increase reproducibility, reveal spatial relationships, and help researchers compare molecular behavior across many samples.

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Research

JoVE Journal - Neuroscience

Automated Quantification of Synaptic Fluorescence in C. elegans

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Cited by 5 •

2012

The abundance of neurotransmitter receptors clustered at synapses strongly influences synaptic strength. This method quantifies fluorescently-labeled neurotransmitter receptors in three dimensions with single-synapse resolution in C. elegans, allowing hundreds of synapses to be rapidly characterized within a single sample without distortions introduced by z-plane projection.

Automated Analysis of C. elegans Fluorescence Images using SegElegans

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2025

Here we provide instructions on effectively utilizing SegElegans, a deep learning system we developed for the automated segmentation of individual worms in widefield microscopy images, for subsequent use in image analysis software such as ImageJ. We provide ways to use the system both online and offline.

Semi-automated Imaging of Tissue-specific Fluorescence in Zebrafish Embryos

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Cited by 6 •

2014

Described here is a protocol for semi-automated imaging of tissue-specific fluorescence in zebrafish embryos.

From Fast Fluorescence Imaging to Molecular Diffusion Law on Live Cell Membranes in a Commercial Microscope

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Cited by 18 •

2014

Spatial distribution and temporal dynamics of plasma membrane proteins and lipids is a hot topic in biology. Here this issue is addressed by a spatio-temporal image fluctuation analysis that provides conceptually the same physical quantities of single particle tracking, but it uses small molecular labels and standard microscopy setups.

Deep-Tissue Imaging of a Zebrafish Brain Using a Three-Photon Fluorescence Microscope

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2025

Source: Hontani, Y., et al. Deep-Tissue Three-Photon Fluorescence Microscopy in Intact Mouse and Zebrafish Brain. J. Vis. Exp. (2022)This video demonstrates the setup and execution of three-photon imaging in an anesthetized zebrafish brain. The protocol enables deep-tissue visualization of fluorescently labeled neurons, revealing real-time neuronal activity and structures for neuroscience research applications.

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