Single-cell Imaging

Single-cell imaging is a set of microscopy methods used to visualize individual cells and measure their structure, behavior, and molecular activity, revealing differences that population-level measurements can obscure. The approach typically combines high-resolution imaging with fluorescent labels, transmitted light, or live-cell time-lapse acquisition to track cellular features and changes over time. In biology, single-cell imaging helps investigate cell division, migration, signaling, gene expression, and interactions with neighboring cells. By linking visual phenotypes with quantitative measurements, it supports studies of cellular heterogeneity, disease mechanisms, developmental processes, and responses to drugs or environmental conditions.

Single-cell Imaging - Related Videos

Research

JoVE Journal - Biology
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Generation of Dispersed Presomitic Mesoderm Cell Cultures for Imaging of the Zebrafish Segmentation Clock in Single Cells

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Cited by 8 •

2014

Somitogenesis is a rhythmic developmental process that spatially patterns the body axis of vertebrate embryos. Previously, we developed transgenic zebrafish lines that use fluorescent reporters to observe the cyclic genes that drive this process. Here, we culture dispersed cells from these lines and image their oscillations over time in vitro.

Research

JoVE Journal - Biology
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Applications of the Single-probe: Mass Spectrometry Imaging and Single Cell Analysis under Ambient Conditions

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Cited by 44 •

2016

Here, we present protocols to perform both ambient mass spectrometry imaging (MSI) of tissues and in-situ live single cell MS (SCMS) analysis using the single-probe, which is a miniaturized multifunctional device for MS analysis.

Research

JoVE Journal - Neuroscience

Ex vivo Live Imaging of Single Cell Divisions in Mouse Neuroepithelium

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Cited by 3 •

2013

Here we develop the tools necessary for ex vivo live imaging to trace single cell divisions in the mouse E8.5...

Imaging Cleared Embryonic and Postnatal Hearts at Single-cell Resolution

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Cited by 8 •

2016

We describe a protocol to volumetrically image fluorescent protein labeled cells deep inside intact embryonic and postnatal hearts. Utilizing tissue-clearing methods in combination with whole mount staining, single fluorescent protein-labeled cells inside an embryonic or postnatal heart can be imaged clearly and accurately.

Immunofluorescence Staining of Drosophila Brains for the Single-Cell Imaging of Glial Cells

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2025

This video demonstrates the immunofluorescence staining of a transgenic Drosophila brain for single-cell imaging of glial cells. The brain expresses membrane-targeted proteins fused with different combinations of antigenic epitopes under the control of a glial-specific recombinase system. The isolated and fixed brains are stained with primary antibodies specific to the antigenic epitopes, followed by fluorophore-conjugated secondary antibodies. This labeling enables the simultaneous imaging of...

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