Cecum Colonization

Cecum colonization is the establishment and persistence of microorganisms in the cecum, a pouch at the junction of the small and large intestines, where microbial communities interact closely with host tissues. Colonization depends on delivery and survival through the gut, access to nutrients, adhesion or retention in the cecal environment, and competition with resident microbes, while epithelial barriers and immune responses regulate microbial abundance. In immunology and infection research, measuring cecum colonization helps determine whether a bacterium can occupy an intestinal niche, resist host defenses, or serve as a reservoir for disease. These studies inform microbiome research, infection models, and strategies to prevent or reduce intestinal carriage.

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JoVE EoE - Rodent Models

Generation of Mouse Proximal Colon Loop Model: A Surgical Procedure to Generate Proximal Colon Loop and Measure Intestinal Permeability by Detection of Fluorescent Markers in Serum Following Intraluminal Injection

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2025

In this video, we describe a surgical procedure to generate mouse proximal colon loop or pcLoop segment followed by intraluminal injection of fluorescent markers into the segment to study the intestinal epithelial permeability.

Electrophysiological Recording from Colonic Afferent Nerves in an Ex Vivo Rat Colon

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2025

This video demonstrates a method to record the activity of colonic afferent nerves in an ex-vivo rat colon, cannulated at both ends and infused with saline to increase intraluminal pressure. As pressure increases, the nerve signal rises, indicating its stimulation.

Isolation of Primary Myofibroblasts from Mouse and Human Colon Tissue

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Cited by 43 •

2013

The myofibroblast is an influential stromal cell of the gastrointestinal tract that regulates important physiologic processes in both normal and disease states. We describe a technique that allows for the isolation of primary myofibroblasts from both mouse and human colon tissue, which can be utilized for in vitro experimentation.

The Ex Vivo Colon Organ Culture and Its Use in Antimicrobial Host Defense Studies

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Cited by 15 •

2017

The ex vivo organ culture allows investigation of biological processes in the context of the intact tissue architecture. Here, we introduce a method of ex vivo culture of the mouse colon, which can be used to study innate immunity and antimicrobial host defense in the intestine.

Detection of Enterohemorrhagic Escherichia Coli Colonization in Murine Host by Non-invasive In Vivo Bioluminescence System

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Cited by 1 •

2018

A detailed protocol of a mouse model for enterohemorrhagic E. coli (EHEC) colonization by using bioluminescence-labeled bacteria is presented. The detection of these bioluminescent bacteria by a non-invasive in vivo imaging system in live animals can advance our current understanding of EHEC colonization.

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