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Mapping the Structure-Function Relationships of Disordered Oncogenic Transcription Factors Using Transcriptomic Analysis
This content is Free Access.
1Center for Childhood Cancer and Blood Diseases,Abigail Wexner Research Institute at Nationwide Children’s Hospital, 2Molecular, Cellular, and Developmental Biology Program,The Ohio State University, 3Division of Pediatric Hematology/Oncology/Blood & Marrow Transplant,The Ohio State University, 4Department of Pediatrics,The Ohio State University
Chapters
- 00:04Introduction
- 00:55In Vitro Construct Panel Setup
- 02:07Cell Collection
- 02:47Construct Expression Validation and Correlative Phenotypic Assay Setup
- 03:50Alignment and Transcript Counting Pipeline
- 05:32Differential Expression
- 07:40Results: Representative Disordered Oncogenic Transcription Factor Structure-Function Relationship Mapping
- 09:31Conclusion
Intrinsically disordered domains are important for oncogenic fusion transcription factor function. To therapeutically target these proteins, a more detailed understanding of the regulatory mechanisms employed by these domains is required. Here, we use transcriptomics to map important structural features of the intrinsically disordered EWS domain in Ewing sarcoma.
