Acute Brain Slices

Acute brain slices are freshly prepared sections of brain tissue that preserve local neurons, synaptic connections, and aspects of native circuitry for short-term study outside the intact organism. Researchers rapidly dissect and cut the brain in oxygenated, physiologically balanced solution, then maintain the slices under controlled conditions while recording electrical activity or applying experimental compounds. In neuroscience, this preparation enables precise analysis of synaptic transmission, neuronal excitability, circuit connectivity, and cellular responses using electrophysiology, microscopy, and pharmacology. Acute brain slices provide a powerful bridge between isolated cell experiments and complex in vivo studies, supporting research into learning, sensory processing, neurological disease, and potential therapeutic mechanisms.

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JoVE EoE - Neuropathology

Measurement of Oxygen Consumption Rate in Acute Mouse Brain Slices

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2025

Source: Zhi, L. et al., Measurement of Oxygen Consumption Rate in Acute Striatal Slices from Adult Mice. J. Vis. Exp. (2022).This video demonstrates how to measure mitochondrial oxygen consumption rate (OCR) in mouse striatal brain slices. It details the steps for preparing the tissue plate and sensor cartridge, loading them into the flux analyzer, and explains the cellular processes underlying OCR patterns.

Ex Vivo Optogenetic Dissection of Fear Circuits in Brain Slices

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Cited by 8 •

2016

Optogenetic approaches are widely used to manipulate neural activity and assess the consequences for brain function. Here, a technique is outlined that upon in vivo expression of the optical activator Channelrhodopsin, allows for ex vivo analysis of synaptic properties of specific long range and local neural connections in fear-related circuits.

Slice It Hot: Acute Adult Brain Slicing in Physiological Temperature

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Cited by 28 •

2014

In this paper we show a method for preparing acute brain slices in physiological temperature, using a conventional physiological solution without special modifications for the cutting (such as adding sucrose) and without intracardial perfusion of the animal before slice preparation.

In vivo Postnatal Electroporation and Time-lapse Imaging of Neuroblast Migration in Mouse Acute Brain Slices

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Cited by 15 •

2013

Neuroblast migration is a fundamental event in postnatal neurogenesis. We describe a protocol for efficient labeling of neuroblasts by in vivo postnatal electroporation and subsequent visualization of their migration using time-lapse imaging of acute brain slices. We include a description for the quantitative analysis of neuroblast dynamics by video tracking.

Electrophysiological and Morphological Characterization of Neuronal Microcircuits in Acute Brain Slices Using Paired Patch-Clamp Recordings

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Cited by 28 •

2015

Patch-clamp recordings and simultaneous intracellular biocytin filling of synaptically coupled neurons in acute brain slices allow a correlated analysis of their structural and functional properties. The aim of this protocol is to describe the essential technical steps of electrophysiological recording from neuronal microcircuits and their subsequent morphological analysis.

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