Clonal Evolution

Clonal evolution is the process by which genetically distinct cell populations arise from a common ancestor and change in frequency over time, shaping adaptation in tumors and other biological systems. In cancer, DNA mutations and other heritable alterations create subclones, while natural selection favors cells whose traits improve survival, proliferation, invasion, or resistance under local conditions and treatment. Competition among subclones, along with genetic drift and changing microenvironments, produces intratumoral heterogeneity and can alter disease progression. Studying clonal evolution helps researchers reconstruct tumor histories, identify treatment-resistant populations, interpret disease recurrence, and design therapies that account for tumor diversity and evolutionary change.

Clonal Evolution - Related Videos

Research

JoVE Journal - Medicine

VDJ-Seq: Deep Sequencing Analysis of Rearranged Immunoglobulin Heavy Chain Gene to Reveal Clonal Evolution Patterns of B Cell Lymphoma

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Cited by 19 •

2015

This protocol describes an approach to interrogate the recombined immunoglobulin heavy chain VDJ regions of lymphomas by deep-sequencing and retrieve VDJ rearrangement and somatic hypermutation status to delineate clonal architecture of individual tumor. Comparing clonal architecture between paired diagnosis and relapse samples reveals lymphoma relapse clonal evolution modes.

Molecular Evolution of the Tre Recombinase

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Cited by 4 •

2008

Here we report the generation of Tre recombinase through directed, molecular evolution. Tre recombinase recognizes a pre-defined target sequence within the LTR sequences of the HIV-1 provirus, resulting in the excision and eradication of the provirus from infected human cells. While still in its infancy, directed molecular evolution will allow the creation of custom enzymes that will serve as tools of molecular surgery and molecular medicine.

Research

JoVE Journal - Neuroscience
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Enumeration of Neural Stem Cells Using Clonal Assays

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Cited by 5 •

2016

Neural stem cells (NSCs) refer to cells which can self-renew and differentiate into the three neural lineages. Here, we describe a protocol to determine NSC frequency in a given cell population using neurosphere formation and differentiation under clonal conditions.

Research

JoVE Journal - Biology
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Isolation of CD133+ Liver Stem Cells for Clonal Expansion

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Cited by 22 •

2011

Here we describe the isolation of CD133 expressing liver stem cells and cancer stem cells from whole murine liver, a process that requires tissue digestion, cell enrichment, and flow cytometry isolation. We include methods for advanced single cell isolation and clonal expansion.

In vivo Clonal Tracking of Hematopoietic Stem and Progenitor Cells Marked by Five Fluorescent Proteins using Confocal and Multiphoton Microscopy

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Cited by 11 •

2014

Combinatorial 5 fluorescent proteins marking of hematopoietic stem and progenitor cells allows in vivo clonal tracking via confocal and two-photon microscopy, providing insights into bone marrow hematopoietic architecture during regeneration. This method allows non-invasive fate mapping of spectrally-coded HSPCs-derived cells in intact tissues for extensive periods of time following transplantation.

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