Synthetic Genetic Array

Synthetic Genetic Array (SGA) analysis is a high-throughput genetic technique that maps interactions between mutations by measuring how combined perturbations affect an organism’s growth or viability. In a typical workflow, a query strain is crossed with a systematically arranged collection of mutant strains, and progeny carrying both alterations are selected and scored, often through colony size or growth measurements. These results reveal synthetic sickness or lethality, when a gene pair causes a stronger defect than either mutation alone, as well as buffering or suppression relationships. SGA analysis is especially valuable in yeast for assigning gene function, reconstructing pathways, identifying genetic networks, and prioritizing potential targets for further biological study.

Synthetic Genetic Array - Related Videos

Research

JoVE Journal - Biology

Mapping Bacterial Functional Networks and Pathways in Escherichia Coli using Synthetic Genetic Arrays

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Cited by 9 •

2012

Systematic, large-scale synthetic genetic (gene-gene or epistasis) interaction screens can be used to explore genetic redundancy and pathway cross-talk. Here, we describe a high-throughput quantitative synthetic genetic array screening technology, termed eSGA that we developed for elucidating epistatic relationships and exploring genetic interaction networks in Escherichia coli.

Education

JoVE Science Education - Engineering

Synthetic Biology

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2023

This video presents synthetic biology and its role in bioengineering. Synthetic biology refers to the methods used to genetically modify organisms in order to make them capable of producing large quantities of a product. This product could be a protein that the cell already makes or a new protein that has been encoded in a newly-inserted DNA sequence. Here, we discuss how an organism's genetic material is modified using transformation or transfection. Then, the process is shown in the...

Genetic Screens

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2023

Genetic screens are critical tools for defining gene function and understanding gene interactions. Screens typically involve mutating genes and then assessing the affected organisms for phenotypes of interest. The process can be “forward”, where mutations are generated randomly to identify unknown genes responsible for the phenotypes, or it can be “reverse”, where specific genes are targeted for mutation to observe what phenotypes are produced.Here, JoVE reviews various types of genetic...

Array Comparative Genomic Hybridization (Array CGH) for Detection of Genomic Copy Number Variants

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Cited by 7 •

2015

Array CGH for the detection of genomic copy number variants has replaced G-banded karyotype analysis. This paper describes the technology and its application in a diagnostic service laboratory.

Engineering Adherent Bacteria by Creating a Single Synthetic Curli Operon

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Cited by 4 •

2012

The design of a synthetic operon encoding both the secretory apparatus and the structural monomers of curli fibers is described. Overproduction of these amyloids and adherent polymers allows a measurable gain of adherence of the E. coli chassis1. Easy ways to visualize and quantify adherence are explained.

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