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JoVE Journal
Genetics
Herstellung von Gen-Deletionen in Escherichia coli durch P1 Transduktion mit verbrauchst...
Herstellung von Gen-Deletionen in Escherichia coli durch P1 Transduktion mit verbrauchst...
JoVE Journal
Genetics
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JoVE Journal Genetics
Producing Gene Deletions in Escherichia coli by P1 Transduction with Excisable Antibiotic Resistance Cassettes

Herstellung von Gen-Deletionen in Escherichia coli durch P1 Transduktion mit verbrauchsteuerpflichtigen Antibiotikaresistenz Kassetten

Full Text
18,101 Views
08:13 min
September 1, 2018

DOI: 10.3791/58267-v

Athanasios Saragliadis1, Thomas Trunk1, Jack C. Leo1

1Evolution and Genetics, Department of Biosciences,University of Oslo

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Please note that some of the translations on this page are AI generated. Click here for the English version.

Overview

This article presents a protocol for generating deletion mutants in E. coli using pre-existing antibiotic resistance-cassette deletion constructs. The method involves mobilizing these deletion mutations into recipient strains via P1 bacteriophage transduction.

Key Study Components

Area of Science

  • Microbiology
  • Genetic Engineering
  • Antibiotic Resistance

Background

  • Understanding gene functions in E. coli is crucial for microbiological research.
  • Deletion mutants help in studying the roles of specific genes.
  • Antibiotic resistance-cassette constructs facilitate the creation of knockout mutants.
  • P1 bacteriophage transduction is a reliable method for gene transfer.

Purpose of Study

  • To provide a fast and reliable method for generating knockout mutants.
  • To demonstrate the use of antibiotic resistance-cassette deletion constructs.
  • To enhance the understanding of gene functions in E. coli strains.

Methods Used

  • Grow donor strain bacteria in lysogeny broth with calcium chloride.
  • Prepare a dilution series of P1 phage stock in LB medium.
  • Mix bacterial suspension with phage dilutions in centrifuge tubes.
  • Incubate the mixtures at 37 degrees Celsius for 20 minutes.

Main Results

  • The method successfully generates knockout mutants in E. coli.
  • Demonstrated efficiency in mobilizing deletion mutations.
  • Provided a reliable protocol for researchers in microbiology.
  • Showcased the utility of P1 bacteriophage transduction.

Conclusions

  • This protocol offers a valuable tool for genetic studies in E. coli.
  • It simplifies the process of creating deletion mutants.
  • The method can be applied to various strains for gene function analysis.

Frequently Asked Questions

What is the main advantage of this method?
The main advantage is its speed and reliability in generating knockout mutants of E. coli.
Who demonstrates this procedure?
Thomas Trunk, a graduate student from the laboratory, demonstrates the procedure.
What is the role of P1 bacteriophage in this method?
P1 bacteriophage is used to mobilize and insert deletion mutations into recipient strains.
What conditions are required for growing the donor strain?
The donor strain should be grown in lysogeny broth with calcium chloride and optionally kanamycin.
What is the purpose of the dilution series of P1 phage stock?
The dilution series is prepared to find the optimal concentration for infection of the donor strain.
How long should the incubation be for the bacterial and phage mixture?
The incubation should be for 20 minutes at 37 degrees Celsius.

Hier präsentieren wir ein Protokoll für die Verwendung von bereits bestehenden antibiotische Resistenz-Kassette Löschung Konstrukte als Grundlage für die Herstellung von Löschung Mutanten in anderen E. Coli -Stämme. Solche Löschung Mutationen können mobilisiert und in den entsprechenden Locus eines Empfängers Stamm mit P1 Bakteriophagen Transduktion eingefügt.

Diese Methode ist nützlich im Bereich der Mikrobiologie, z. B. um die Funktionen bestimmter Gene herauszufinden. Der Hauptvorteil dieser Methode besteht darin, dass sie eine schnelle und zuverlässige Methode zur Erzeugung von Knockout-Mutanten von E.Coli ist. Dieses Verfahren wird von Thomas Trunk, einem Doktoranden aus meinem Labor, demonstriert.

Um einen Spenderstamm zu infizieren, der eine Gendeletion auf der Grundlage einer verbrauchbaren Antibiotikakassette enthält, wachsen die Bakterien zunächst in fünf Millilitern Lysogenbrühe oder LB mit zehn Millimolar Calciumchlorid und optional mit 25 Mikrogramm pro Milliliter Kanamycin auf eine optische Dichte bei 600 Nanometern von etwa 1,0. Es wird eine Verdünnungsserie eines vorhandenen P1-Phagenbestands in dem LB-Medium hergestellt und 200 Mikroliter der Bakteriensuspension mit je 100 Mikrolitern Phagenverdünnung in einzelnen 15-Milliliter-Zentrifugenröhrchen gemischt. Inkubieren Sie die Röhrchen 20 Minuten lang statisch bei 37 Grad Celsius.

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