Pulmonary Vessel Segmentation

Pulmonary vessel segmentation is the computational process of identifying and delineating blood vessels in images of the lung, converting complex vascular anatomy into measurable structures for analysis. It typically combines image preprocessing with intensity, shape, or machine-learning methods to distinguish vessel regions from surrounding lung tissue, then refines connected branches and vessel boundaries. In developmental biology, this approach supports quantitative studies of pulmonary vascular growth, branching, remodeling, and spatial organization across developmental stages. By producing reproducible maps of the vascular network, segmentation helps researchers compare normal and abnormal development, assess experimental phenotypes, and connect structural changes with mechanisms of lung formation and function.

Pulmonary Vessel Segmentation - Related Videos

Research

JoVE Journal - Medicine

Catheter-based Endovascular Angioplasty for Fibrosing Mediastinitis-associated Pulmonary Vein Stenosis

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2025

Pulmonary vein stenosis (PVS) is a life-threatening complication of fibrosing mediastinitis (FM), with a poor prognosis if not properly treated. Currently, catheter-based endovascular angioplasty is a promising therapeutic strategy for FM-associated PVS. This protocol primarily outlines a stepwise approach to the transcatheter procedure for FM-associated PVS.

Precision Cut Lung Slices as an Efficient Tool for Ex vivo Pulmonary Vessel Structure and Contractility Studies

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Cited by 9 •

2021

Presented here is a protocol for preserving the vascular contractility of PCLS murine lung tissue, resulting in a sophisticated three-dimensional image of the pulmonary vasculature and airway, which can be preserved for up to 10 days that is susceptible to numerous procedures.

Murine Echocardiography of Left Atrium, Aorta, and Pulmonary Artery

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Cited by 8 •

2017

The following protocol describes the methodology for the acquisition and analysis of echocardiographic images used to obtain the Left Atrial Volume (LAV), Aorta (Ao) diameter, and Pulmonary Artery (PA) diameter in mice. This technique is a non-invasive, non-terminal procedure that allows assessment of the cardiopulmonary function.

Research

JoVE Journal - Developmental Biology
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Analysis of Coronary Vessels in Cleared Embryonic Hearts

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Cited by 11 •

2016

We present a protocol for the analysis of coronary vessels in whole embryonic murine hearts up to E15.5, using standard immunological staining methods followed by optical clearance and confocal microscopy. This technique enables visualization of blood vessels throughout the entire heart without the need for time-consuming analysis of serial sections.

Research

JoVE Journal - Medicine
Free Sample

Videomorphometric Analysis of Hypoxic Pulmonary Vasoconstriction of Intra-pulmonary Arteries Using Murine Precision Cut Lung Slices

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Cited by 29 •

2014

Hypoxic pulmonary vasoconstriction (HPV) is an important physiological phenomenon by which at alveolar hypoxia lung perfusion is matched to ventilation. The major vascular segment contributing to HPV is the intra-acinar artery. Here, we describe our protocol for the analysis of HPV of murine pulmonary vessels with diameters of 20-100 μm.

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