1. Isolation and culture of human stem cells and preparation for injection into embryos
- Human stem cells used as examples in this protocol (brain, adipose, bone marrow) are isolated in different ways from the different tissues. For example, adult neural stem cells are isolated from tissue pieces collected from the ventricular wall of the brain during endoscopic neurosurgery, which are then dissociated to individual cells that are cultured in vitro. The neural stem cells spontaneously form neurospheres that float in the culture medium while other cell types adhere to the bottom of the dish7. Adipose-derived mesenchymal stem cells are obtained from liposuction material that is enzymatically digested and strained to remove fibrous tissue and then centrifuged to remove mature adipocytes. The resulting cells are resuspended in culture medium supplemented with serum to promote the proliferation of stem cells over other cell types8 Hematopoietic stem and progenitor cells can be isolated from bone marrow aspirates by positive selection using specific antibodies conjugated to magnetic particles (Myltenyi Biotec, Germany or Dynal-Invitrogen, USA) and magnetic cell separation, and/or using antibodies conjugated to fluorophores and fluorescence activated cell sorting (FACS)9.
- To facilitate later identification, label the stem cells with a fluorescent marker prior to implantation into chicken embryos. Stem cells can be labeled with fluorescent lipophilic dyes such as DiI (Invitrogen, USA) or PKH26 (Sigma, USA) using supplier-recommended protocols up to shortly before implantation, or, for a permanent label with essentially no danger of contaminating host cells, they can be transduced with the gene for a fluorescent protein like Green Fluorescent Protein, using lentiviral vectors, while still in culture10.
- Protocols for the culture and propagation of human stem cells vary. Detailed protocols can be found in the literature. Briefly, sphere-forming stem cells are typically cultured in flasks, whereas adherent stem cells are typically cultured in petri dishes (which facilitate trituration when splitting, see below), in appropriate medium. For splitting or harvesting, pellet sphere-forming cells by 5 min centrifugation at 1200rpm and resuspend in pre-warmed trypsin/EDTA solution for no more than 5 min at 37 degrees Celsius. For adherent cells add the trypsin/EDTA solution to the petri dish, and triturate at the end of 5 minutes. Terminate the trypsinization by adding Ca2+-containing medium, sometimes complemented with albumin. To remove the trypsin/EDTA, centrifuge the cells (5 min at 1200rpm), remove the supernatant, resuspend in cold injection vehicle (typically medium or phosphate-buffered saline), and centrifuge again (5 min at 1200rpm). Remove most of this supernatant and gently resuspend the cells to create a highly concentrated cell suspension.
- Keep the suspension of human stem cells in a small, capped vial or microfuge tube on ice for up to several hours prior to injection. Survival in this state may be cell type-dependent. The injection vehicle must be optimized according to the properties of the cells, including their adhesivity (e.g. a low-Ca2+ vehicle may help prevent clumping) and resistance to hypoxia and pH changes.
2. Egg incubation and preparation
- Store fertilized eggs in a cooling chamber (for example: Termaks, Bergen, Norway) at 14-15°C prior to incubation. At this temperature development is arrested until incubation begins. Fertilized eggs stored for more than about 10 days or at lower temperatures have a lower rate of subsequent development and survival.
- To reinitiate development, place the eggs in a humidified, forced draft incubator (for example: Binder, New York, USA) at 38-39°C, and incubate until the desired stage of development is reached (for staging, see ref. 11).
- Before opening the egg, create an air pocket above the embryo by inserting an 18 gauge syringe needle through the egg shell (not too deeply to avoid piercing the yolk) and evacuating 4 ml of albumin (Figure A). This creates a pressure drop that within several minutes is equalized by the entry of air through the porous shell. As the air enters it collects at the highest point within the shell, thus separating the embryo from the inner surface of the shell.
- Seal the hole created by the syringe needle with conventional plastic tape.
3. Pulling glass micropipettes
- Pull glass micropipettes from borosilicate glass (for example, 1.2mm OD x 0.94 mm ID, Harvard Apparatus, USA) on a conventional electrode puller (for example, Model P-2000, Sutter Instruments, USA). Adjust puller settings to obtain micropipettes that have high input resistance when used as microelectrodes. Tips should be approximately 1-1.5 cm long. The shafts can be marked at 1 mm intervals for calculating volumes ejected.
- Break the micropipette tips to a workable size by bending them with a forceps or pushing them against a solid surface while viewing under a microscope. The break should be as even as possible around the perimeter of the glass and the resultant inner diameter at the tip should accommodate the size of the cells to be used without getting clogged. Typically a 20-30 micron inner diameter works well.
4. Preparation of Fast Green dye solution (contrasting reagent)
- Prepare a 0.1 % (w/v) solution of Fast Green dye (Sigma-Aldrich, USA) by dissolving in chicken physiological saline (137 mM NaCl, 5 mM KCl, 2 mM CaCl2, 1 mM MgCl2, 1 mM Na-phosphate, 5 mM HEPES, 11 mM glucose, pH 7.4).
- Filter the Fast Green solution through a 0.22 μm Millex GP filter (Millipore Co., Bedford, USA).
5. Opening the eggs and contrasting the embryo
- Place two pieces of tape on the top of the egg, covering the dimensions of the air pocket. Keeping the egg oriented so that the taped area (and thus the air pocket) is uppermost, cut a small window within the borders of the taped area using a sturdy dissection scissors. The tape adds support and helps prevent eggshell fragments from falling onto the embryo. Air bubbles associated with the air pocket can be popped using the back end of a plastic pipette tip or other blunt probe.
- Draw some Fast Green solution into a 1 ml syringe with a 25 gauge needle. Remove any air bubbles in the syringe and the needle. Bend the needle to a 45-degree angle, penetrate at a point outside the embryonic plate (identified by the ring of blood vessels that circumscribe it; piercing within the embryonic plate increases mortality) and carefully guide the needlepoint under the embryo. Inject the dye until desired contrast is achieved. The embryo, which is normally transparent, should now stand out as a whitish ghost against the dark green color (Figure B). Many investigators use India Ink (diluted to 10% v/v) instead of Fast Green. In this case it is important to use India Ink that is non-toxic, such as Pelikan Fount India Ink.
6. Making hindbrain and spinal cord neural tube lesions
- Produce sharpened tungsten needles by flame-etching short (2-3 cm) pieces of 100 μm diameter tungsten rod (catalog number 719000, A&R Systems, Seattle, Washington), with an acetylene/oxygen torch. This is done by inserting the end of the rod very briefly into the torch flame until a spark is seen, which represents the explosive erosion of the outer layers of tungsten, leaving behind a sharp tip.
- Using a sharpened tungsten needle, slice through and deflect the vitelline membrane covering the area for microsurgery.
- Using a second sharpened tungsten needle (the tip of the first needle is often damaged after slicing through the vitelline membrane and not fit for subsequent microsurgery), cut carefully through the epithelium overlying the neural tube and deflect it, then cut around and under the piece of the neural tube to be removed, using short, quick upward strokes (Figure C). Making the transverse cuts first and then the longitudinal cuts is usually most successful. Do not cut too deep or you risk penetrating underlying blood vessels, which typically is fatal.
- Gently flip or drag the resected tissue piece away from the lesion site using the tungsten needle. If this proves difficult, it can also be removed by mouth suction using a glass micropipette attached to flexible tubing.
7. Injection of human stem cells
a. Injection into a lesion of the neural tube
Draw a small amount of cells into the tip of a glass micropipette by mouth suction using a plastic tube. The working concentration of the cell suspension must be optimized for the cell type to be injected. Mount the micropipette on a micromanipulator and connect it to a microinjector pump (for example: PV830 Pneumatic PicoPump, WPI, Washington, USA). Under visual control using a dissection microscope, guide the micropipette tip into the lesion and carefully expel the cells by increasing the air pressure (either by pulses of constant pressure or by gradually ramping up the pressure) (Figure C). When the desired amount of cells is deposited within the lesion site, carefully withdraw the micropipette.
b. Injection into the lumen of the neural tube
In some cases it may be desirable to inject cells into the developing brain ventricles, for example if the cells are invasive enough to gain access to the neural tissue in the absence of lesions. Injection of cells into the lumen of any brain region requires using a developmental stage at which the lumen provides a large enough receptacle and is easily accessed; HH stages 12 to 18 are favorable in this regard. A lesion is not necessary. Simply pierce the wall of the neural tube with the glass micropipette prior to injection of cells. The key elements for the success of this method are the sharpness of the micropipette and the abruptness of the penetration; too slow a movement and the micropipette tip may only dimple the neural tube wall without penetrating.
c. Systemic injection
Systemic injections can be made via the extra-embryonic blood vessels (starting from HH stage 15, when these vessels are well developed). This is not uncommonly accompanied by some bleeding and since there are many small arteries and fewer larger veins, intra-arterial injections are generally safer when it comes to the embryo's survival. On the other hand, intravenous injections provide quicker access of the cells to the heart and thus probably a more even distribution of the cells. A successful injection requires a sharp micropipette with a diameter smaller than the vessel targeted. Approach the vessel along its axis at a small angle from the horizontal (about 30 degrees). Push the micropipette against the vessel until the vessel begins to occlude. Then push further in a firm, abrupt movement to penetrate. Retract slowly until blood is seen to draw by capillary action into the tip of the micropipette. Injection of cells should then be performed using constant pressure, after which the micropipette is retracted with a quick movement.
8. Sealing the egg
- After the injection, let the egg stand still for a few minutes to allow the injected cells to settle and adhere. To avoid dehydration (which can occur quickly and can prove fatal), lay a piece of moistened tissue or filter paper over the window during this rest period.
- After a few minutes and the cells have settled, dry the shell around the window and seal the window with conventional plastic tape. Make sure this seal is tight and that no albumin can leak through the opening or between the shell and the tape (this often proves fatal during subsequent incubation).
- Replace the eggs to the forced-draft incubator for further development. Observation can be made at intervals by removing the tape over the window.
9. Embryo dissection
- Once the embryo has reached the desired stage, crack open the egg into a bowl of ice-cold physiological saline or phosphate-buffered saline (the tape covering the window should be cut first to allow the two halves of the eggshell to separate). The ice-cold saline serves to anesthetize the embryo by hypothermia. The heart should quickly slow and stop within a couple of minutes.
- Separate the embryo from the extraembryonic membranes and stage it using ref. 11.
- Decapitate the embryo, transfer it to a dissection dish that has a silicone rubber floor and contains oxygenated physiological saline supplemented with glucose (137 mM NaCl, 5 mM KCl, 2 mM CaCl2, 1 mM MgCl2, 1 mM Na-phosphate, 5 mM HEPES, 11 mM glucose, pH 7.4) and pin it fast ventral side up. Remove the abdominal and thoracic viscera. Using an angled scissors, make longitudinal incisions along each ventrolateral aspect of the vertebral column. Particularly at later stages (after day 6 of development), the initial incision is best made in the lumbosacral region where the space between the vertebrae and the spinal cord is greatest. Remove the ventral aspect of the vertebral column to reveal the spinal cord. Make sure that the physiological saline remains oxygenated by bubbling at approximately 10-minute intervals with pure medical oxygen.
- Carefully cut the nascent dorsal and ventral roots on either side, transect the spinal cord at the desired levels, and gently lift it out of the vertebral canal. The spinal cord will survive for many hours in this state and can be subjected to anatomical12 and physiological13,14 experiments.

Figure 1. A) The appropriate approach for evacuation of albumin. Note the position of the embryo and the placement of the needle. B) Contrasting of the embryo. Note the penetration point of the needle outside the embryonic disc. C) Schematic representation of the procedure for unilateral spinal neural tube lesion followed by cell transplantation.