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Research Article
Mozammel Bhuiyan1, Michelle Lin2, Carly McCurry1, Jessica Lamb1, Marcio A. Diniz3, Karni Bedirian3, Anil Chauhan4, Abhishek Jha4, Aditi Jain4, Enrique Leira5, Mohammad B. Khan6, Pradip K Kamat6, David C Hess6, Huaxin Sheng7, Bingren Hu8, Lauren H. Sansing9, Cenk Ayata10, Takahiko Imai10, Kirsten Lynch11, Patrick Lyden1,12
1Department of Physiology and Neuroscience, Zilkha Neurogenetic Institute,Keck School of Medicine of USC, 2Department of Neurosurgery,Keck School of Medicine of USC, 3Department of Population Health Science and Policy,Icahn School of Medicine at Mount Sinai, 4Department of Internal Medicine, Division of Hematology, Oncology and Blood & Marrow Transplantation, Carver College of Medicine,University of Iowa, 5Departments of Neurology & Neurosurgery, Carver College of Medicine, Department of Epidemiology, College of Public Health,University of Iowa, 6The Medical College of Georgia at Augusta University, 7Department of Anesthesiology,Duke University, 8University of California, San Diego, 9Department of Neurology,Yale University, 10Neurovascular Research Unit,Massachusetts General Hospital, 11Laboratory of NeuroImaging,USC Mark and Mary Stevens Neuroimaging and Informatics Institute of the Keck School of Medicine of USC, 12Department of Neurology,Keck School of Medicine of USC
Erratum Notice
Important: There has been an erratum issued for this article. View Erratum Notice
Retraction Notice
The article Assisted Selection of Biomarkers by Linear Discriminant Analysis Effect Size (LEfSe) in Microbiome Data (10.3791/61715) has been retracted by the journal upon the authors' request due to a conflict regarding the data and methodology. View Retraction Notice
To simulate thromboembolic stroke, emboli prepared from heterologous rat blood were injected into the middle cerebral artery, followed by administration of systemic thrombolysis for recanalization. This version of the model is optimized for use in a multi-laboratory network and supports testing multiple candidate therapeutics.
Current translational rodent stroke models induce middle cerebral artery occlusion (MCAo) using nylon filaments, injected emboli, intraluminal thrombin, or perivascular endothelin-1 to simulate human stroke. Among these methods, thromboemboli injection followed by thrombolysis best mimics the neuroinflammatory events seen in human patients and may be preferable to the inert nylon filament method most widely used. The standard thromboembolic models, used in leading single laboratories, however, can be time-consuming, produce variable results, and require considerable skill to master. To address these limitations, we developed a thromboembolic MCAo model that targets vessel occlusion and uses intravenous thrombolysis to achieve recanalization, paralleling the systemic thrombolysis administered in clinical scenarios. To reduce the number of animals, we developed a method to store blood from donor animals for later emboli preparation for multiple subjects. Our utilization of prefabricated Doccol microcatheters simplifies thrombus preparation and injection by pre-loading thromboemboli into the microcatheters that are then inserted into the internal carotid artery. To achieve recanalization, we infused intravenous Tenecteplase at a dose of 1.5 mg/kg. To promote reproducibility, we prepared and field-tested standard operating procedures, training videos, and hands-on surgical training workshops. The model uses a standard surgical approach that should be familiar to all investigators who use the widely accepted nylon filament model. Passage of the microcatheter into the distal internal carotid artery, avoiding the pterygopalatine artery, is accomplished in a manner similar to the nylon filament insertion. Recovery and post-stroke assessments may be done with typical behavioral, radiographic, and histologic protocols. This model offers a practical, reproducible, and accessible approach for investigators seeking a thromboembolic MCAo model with controlled recanalization.
Stroke is a leading cause of death and disability worldwide1. Many patients benefit from intravenous thrombolysis, and selected patients benefit from mechanical thrombectomy. Since not all patients arrive at a hospital in time for thrombolysis or thrombectomy, and since not all patients benefit from complete recovery, there remains a considerable need for further development of additional or adjunctive cerebroprotective therapeutics. The most widely used rodent ischemic stroke model is the monofilament occlusion of the middle cerebral artery (MCA) followed by complete reperfusion. This model simulates large vessel occlusion (LVO), modeling patients with large strokes undergoing successful complete mechanical thrombectomy. However, this model captures a small percentage of clinical strokes. In contrast, more patients suffer thromboembolic strokes secondary to atherosclerosis (in situ atherosclerotic plaque rupture or athero-emboli from systemic disease), and are treated with systemic thrombolysis alone, which the nylon model fails to replicate2,3. In addition, the nylon filament MCAo model lacks the inflammatory cascade associated with thrombotic occlusion4,5. Animal models employing thromboemboli followed by systemic thrombolytic administration would represent the pathophysiology and basic biology occurring in many stroke patients4,6. So far, however, rodent thromboembolic stroke models are known to be complex and difficult to reproduce. In isolated laboratories with dedicated experts, a thromboembolic model can be achieved with reasonable reproducibility. Such a model does not readily lend itself to widespread use, as needed on multi-laboratory projects.
Herein, we provide detailed protocols for an updated and standardized thromboembolic middle cerebral artery occlusion (TE-MCAo) followed by systemic thrombolysis model. Specifically, we simplified the thrombus preparation, standardized thrombus-loading into catheters, and validated the scalability of this model for multi-laboratory trials. We developed this model for use in the Stroke Preclinical Assessment Network (SPAN). We intended, however, that the model be useful to any network seeking to implement high-volume pre-clinical network trials of new, candidate treatments. Using our standardized model, we were able to induce TE-MCAo into 6 rats per day per study site during the study period.
SPAN and similar networks have grown in response to repeated and ongoing failures to translate promising cerebroprotectants from the pre-clinical setting to success in clinical practice7. In 2019, the National Institutes of Neurological Disorders and Stroke (NINDS) initiated SPAN8. SPAN aims to more effectively screen potential therapeutics by minimizing bias through centralized masking, randomization, and automated centralized outcome analysis. SPAN 1 employed the nylon filament model in its first two iterations because all participating laboratories were already using it, and it was easy to deploy9. To more faithfully model many aspects of thromboembolism and thrombolysis, SPAN sought to create the TE-MCAo model described here. This model would be helpful for the preclinical surgeons who are transitioning from nylon filament model to TE-MCAo model. We recommend that preclinical labs should confirm the presence of stroke 24/48 h after MCAo (or TE-MCAo) using an imaging technique, e.g., magnetic resonance imaging (MRI).
The SPAN Network has been fully described in previous studies9, and all SPAN Standard Operating Procedures (SOPs) are available on the SPAN website. In brief, the network is managed by a coordinating center (CC) that handles drug distribution, data quality control, verification of protocol adherence, and network communication. All SOPs are drafted by the CC and approved by a Steering Committee after review. In SPAN, all rodents have an MRI compatible bar-coded ear tag placed upon arrival at the research laboratories, and all subjects are registered into the SPAN Research Electronic Data Capture (REDCap) Database. Animals are randomized by the CC using randomization tables stratified for site and sex. In SPAN 1 and SPAN 2, putative therapeutics were investigated for efficacy at six participating research laboratories. All test drugs were packaged in identically appearing vials, labeled at the coordinating center, and shipped to research laboratories at the start of the project.
All participating SPAN laboratories, including the coordinating center at USC, followed NIH and AAALAC guidelines for the humane and ethical treatment of animals. Approval of the local IACUC was obtained at all sites.
1.Thrombus preparation
NOTE: All blood and thrombus should be handled according to all local institutional guidelines for biohazards. All materials that come into contact with blood should be either disposed of as biohazardous waste or, in the case of surgical instruments, thoroughly cleaned and disinfected by autoclave. To reduce the use of blood donor animals in this trial, we developed a method for storing donor blood and then using blood to make thromboemboli as needed.
2. Catheter loading
3. Animal surgery and anesthesia
4. Collection of donor blood
5. TE-MCAo
NOTE: The TE-MCAo approach uses the standard cut down onto the common carotid artery. Choice of anesthesia and cut-down approach are up to the user. The protocol here starts at the point where the surgeon has already isolated the common carotid artery (CCA), the internal carotid artery (ICA) and the external carotid artery (ECA).
6. Systemic Thrombolysis
NOTE: Tenecteplase (TNK, 1.5 mg/mL) may be purchased for use as systemic thrombolysis. Users may prefer other lytic agents. Individual 50 mg vials are reconstituted with 50 mL of distilled water, and then 2.5 mL is precisely aliquoted into 3.0 mL vials. The aliquots may be frozen at -20 °C for later use. The stability of reconstituted recombinant tissue plasminogen activator stored at -20 °C is 60 days11.
7. Statistical methods

Figure 1: Blood collection from donor animals and thrombus preparation. Blood was drawn from the donor animal through femoral artery catheterization and transferred to a microcentrifuge tube with (can be stored up to 4 weeks) or without EDTA (same day usage). To prepare the thrombus, calcium chloride solution was added to the stored blood tubes and immediately aspirated into a PE-50 catheter. The coiled PE-50 tubing was incubated in pre-warmed phosphate-buffered saline (PBS) at 37°C for 2 h in a table-top oven. After 2 h, blood-filled PE-50 tubing was immediately transferred to 4°C for storage. See section 1 in the protocol for more information. Please click here to view a larger version of this figure.

Figure 2: Loading thrombus into the catheter for injection. (A) On the day of MCAo surgery, thrombus was extruded from the PE-50 tubing into a petri dish containing PBS. (B) On the petri dish, the thrombus was trimmed to approximately 6 cm in length with a razor blade. (C) Thrombus was washed with PBS by drawing it into a PE-50 tubing and expelling it 5 times and then into a PE-10 tubing 15 times. (D) Thrombus was transferred to a petri dish containing concentrated Evan's Blue solution. (E) Thrombus was transferred to a petri dish containing diluted Evan's Blue solution and loaded into a prefabricated microcatheter. (F) The microcatheter was advanced through the internal carotid artery of the rat until 16 mm from the tip of the catheter passed from the carotid bifurcation of the common carotid artery and injected using a motorized syringe pump. See section 2 in the protocol for more information. Please click here to view a larger version of this figure.
In a pilot feasibility study, we enrolled 135 subjects at 6 research laboratories. Although subjects were randomized to one of 8 treatments, we report here on aggregate data only to illustrate the feasibility of the model. Of 135 enrolled subjects, TNK was given at the correct dose and time in 132 (98%). MRI was obtained 3 days after TE-MCAo in 102 (75%) due to animal death before scan in 33 (24%). Animal loss before Day 3 was consistent across all 6 laboratories (Table 1), indicating that the model can be deployed across multiple sites. The mean ± SD size of the lesions was 13 ± 16% (lesion area includes ischemia and edema as a percentage of the ipsilateral hemisphere) with some variability across laboratories (Table 2). Representative MR images and post-mortem emboli may be seen in Supplemental Figure 1.
| Laboratory | ||||||
| Variable | AG | DK | IW | MG | SD | YL |
| Sample Size (N) | 23 | 30 | 11 | 28 | 24 | 19 |
| MRI Done | 19 | 24 | 9 | 23 | 14 | 13 |
Table 1: Feasibility by Laboratory. The study laboratories were Augusta University (AG), Duke (DK), University of Iowa (IW), Massachusetts General Hospital (MG), University of San Diego (SD) and Yale University (YL). The number of enrolled animals (N) and the number that survived to have MRI scanning was done Day 3 after stroke are shown. This data supports the feasibility of the model.
| Site | Sample Size (N) | Lesion Volume (%) Mean ± SD | Midline Shift Index (%) Mean ± SD |
| AG | 19 | 11 ± 14 | 11 ± 12 |
| DK | 24 | 18 ± 17 | 19 ± 13 |
| IW | 9 | 08 ± 13 | 13 ± 12 |
| MG | 23 | 09 ± 11 | 15 ± 17 |
| SD | 13 | 14 ± 21 | 04 ± 19 |
| YL | 12 | 18 ± 22 | 14 ± 15 |
Table 2: Volume of lesion seen on Day 3 MRI scans, by site. To establish the reproducibility of the model across six study sites, the lesion volume (ischemia plus edema) and midline shift were compared. Lesion volume is expressed as the areal percent of the ipsilateral hemisphere. Midline shift is expressed as the linear percent of the maximum width of the intracranial space. The data confirms heterogeneity across the laboratories.
Supplemental Figure 1: Representative Images. (A-E) Various multi-echo, multi-scan (MEMS) images of rat brains taken 48 h after TE-MCAo. The sections are approximately 1mm anterior to bregma. (F-J) Several examples of emboli lodged at the MCA origin. Please click here to download this figure.
We refined the thromboembolic rodent model of ischemic stroke for use in a multi-laboratory pre-clinical testing network, SPAN. We greatly reduced the number of animals used by developing a method to store donor blood for later use. We also simplified the preparation of thromboemboli and the surgical approach to facilitate the performance of several MCAo procedures in one day. Our intention is that the TE-MCAo reach the same levels of user comfort and surgical volumes as are possible with the widely used nylon filament version of the MCAo. To achieve this result, we held two in-person surgeon training workshops, and all of the surgeons involved in this study had already several months, if not years, of experience with the more standard filament model. We demonstrated feasibility across six different research laboratories and showed excellent protocol adherence.
In choosing to implement this protocol, an investigator should consider the following items that determine protocol success. First, scrupulous care in collecting blood will influence successful thrombus formation. Arterial, not venous, blood should be collected to avoid premature clotting. Second, it is important to collect more blood than seems to be needed. Sometimes one specimen will fail to thrombose overnight, while the others will. Third, we strongly recommend that catheter loading be done using optical magnification, either surgical loupes with a headlamp or a magnifying lens with illumination. Fourth, cautious and careful dissection of the CCA, ICA, and ECA is essential to avoid tearing and intravascular thrombosis. Also, it is essential to visualize the PPA to ensure that the delivery catheter properly enters the ICA. Fifth, it is rare to see any adverse effect in the rodents due to the injection of thrombolytics. In our studies, we did not see any adverse events, such as angioedema or peripheral bleeding, following TNK injection. This is not to say it's not possible, but we are not aware of any reports of systemic side effects of thrombolytics in rodents. An investigator choosing to implement this protocol for the first time may well be advised to consult with one of the investigators named as co-author here, as we found personalized instruction to be very helpful.
In selecting an animal disease model for testing candidate therapies, it is important to accurately represent the patient population the drug is intended to treat. Focal ischemic stroke models include Rose Bengal photothrombotic models, cortical pial artery occlusion, and stereotactic endothelin-1 injection13,14,15. These models have the advantage of creating highly reproducible lesions in predictable areas of the cortex. This advantage makes them preferable in studies of cellular mechanisms, or in correlating lesion location with behavioral outcomes. Added cost, complexity, and lack of reperfusion component make them less useful for drug screening.
The MCAo with intraluminal monofilament or thromboembolism are the established models of choice for large vessel occlusion (LVO)10,16,17. The silicon-coated monofilament model is simple to execute and widely used. Although the location and size of the lesion are less predictable, in large-scale drug testing, this heterogeneity is viewed as an advantage because human strokes are also quite heterogenous18,19. A disadvantage of the monofilament method is that the occlusion is biologically inert. In patients, thrombi and thrombolysis produce an inflammatory cascade associated with the release of thrombin, plasminogen, and other thrombus elements20,21,22. To overcome this limitation, many have proposed models of thromboembolism in rabbit, porcine, canine, and non-human primate studies23,24,25,26,27. These studies are complex and require specialized expertise in general. Nevertheless, we sought to adapt the thromboembolic model for use in our multi-laboratory, pre-clinical testing network. This required that we simplify the thromboemboli preparation, streamline the surgical approach, and significantly reduce the number of animals needed. We devised a thromboembolic model, the TE-MCAo, that could be deployed successfully at six different laboratories with excellent protocol adherence (Table 1) and reasonably consistent lesion size (Table 2). Throughput was sufficient, averaging 6 subjects per week.
There are several troubleshooting steps that may become useful. Failure of blood to thrombose is the most frequent source of protocol failure and is most often due to contamination of the preparation catheter with EDTA or heparin if placed on the surgical table. We recommend a scrupulous collection technique. We also recommend preparing the calcium chloride solution used to inactivate the EDTA fresh every week or every other week. After eluting the thrombus from the preparation catheter, it can be challenging to slice the thrombus into the required 5 cm fragments. Some thrombi are fragile and easily fractured. We recommend preparing the clots with optic magnification, and in extreme cases, moving on to a different donor thrombus. Aspirating and eluting thrombi requires a moderate level of skill; hence we recommend quite a long training period. Assure that the tip of the aspiration catheter is free of snags using optical magnification. Thrombi can be jammed in the implantation catheter - we recommend gentle 'back-and-forth' alternation between aspiration and elution. For surgeons experienced with the typical MCAo filament model, identification of the PPA may be a new step. We strongly recommend labeling the thrombi with Evan's blue, so that the catheter can be traced and followed as it ascends through the ICA. The bifurcation of the ICA/PPA may be easily located by careful, deep dissection following the ICA, and is reliably located deep to a thin branch of the internal carotid nerve.
This protocol comes with some limitations. There is an element of surgical skill necessary to perform cannulation of rodent carotid arteries. However, this is equally true of the filament model. Handling of the blood thrombi also requires surgical skill. As with all thromboembolic models, there is a lower rate of successful infarction compared to the filament model. If the goal of the investigation is more frequent incidents of infarction, the filament model would be preferable. On the other hand, if the goal is a replication of thrombus and thrombolysis then this model is desirable.
This model is intended for testing candidate cerebral protectants using a model that faithfully employs thrombus and thrombolysis. Future directions could include as well, studies of adjuvant therapy targeting the no reflow phenomenon. Many have proposed anticoagulants and antiplatelet agents for this purpose.
In conclusion, the TE-MCAo protocol presented here is adapted to allow deployment in multiple laboratories. We simplified the preparation of thrombi and streamlined the surgical approach. We devised a method to store donor blood, significantly reducing the numbers of animals needed.
PL reports income from Apex Innovations for consulting. CA has consulting agreements with BioAxane Biosciences and Charite Hospital, Berlin, and is a member of a Scientific Advisory Board with Neurelis. EL is a PI in a NINDS clinical trial application testing OX1, a Uric Acid based product of Freeox Biotech. No other authors have disclosures.
This work was supported by grants from the US National Institutes of Health (NIH): U24 NS113452 and U24 NS130600 (PL); U01NS113388 (AKC and ECL); UE5 RPPR 5UE5NS099008 (ML); U01NS130588 (CA); U01NS130590, (DH, MK, KD); U01NS130598 (HS); 1U01NS130557 (BH); U01NS130585 (LS).
| 1 ml syringe | BD | 309628 | |
| 10x loupes | |||
| 1cc syringe | Terumo | SS-01T | |
| 23g blunt needle | Grainger | 5FVK7 | |
| 3.0 cc syringe | BD | 309656 | |
| 3-0 silk ligature | |||
| 30g needle | BD | 305128 | |
| 5-0 prolene suture | Ethicon | 8698 | To close the skin cut |
| 5-0 silk ligature | Ethicon | A182 | |
| Aneurysm clamp | |||
| Atropine sulfate | Vet One | NDC86136-006-10 | Reduce bronchial secretions |
| Blunt grooved forceps | |||
| Bupivacaine | Xelia Pharmaceuticals | NDC70594-118-01 | Local anesthetics |
| Calcium chloride | Sigma | C7902 | |
| Carprofen | Zoetis Inc | NADA #141-199 | Analgesic |
| Centrifuge tubes | Eppendorf | 22364111 | For blood collection |
| Ethanol | Koptec | UN1170 | |
| Evan’s Blue | Sigma | E2129 | |
| Heating pad | Harvard Apparatus | K021-435 | |
| Hemostatic clamp | |||
| Isoflurane | Vet One | NDC13985-528-60 | |
| Made By Me Ultimate Weaving loops | Horizon Groups | Not applicable | Soft restraints |
| Micro scissor | F.S.T. | 15000-00 | |
| Microcatheters | Doccol Corporation | PE-FL-360-200-300 | Prefabricated injection catheters |
| PE-10 catheter | BD | 427401 | |
| PE-100 tubing | Intramedic | 7426 | |
| PE-50 tubing | BD | 427410 | |
| Pediatric EDTA tubes | BD Microtainer | K2E-363706 | Store donor blood |
| Petri dish | Eppendorf | 30702115 | |
| Phosphate buffered saline | Fisher | B2438 | |
| Prevantics | PDI Inc. | NDC10189-1080-1 | Antiseptic |
| Q-tip | VWR | 89031-288 | |
| Razor blade | AccuTec Pro | 71960 | |
| Saline | Hospira, Inc. | NDC 0409-4888-02 | |
| Scissor | F.S.T. | 14958-11 | |
| Sharp forceps | |||
| Syringe pump | New Era Pumps Inc. | BS-300 | |
| Tabletop oven | Boekel | 132000 | |
| Tenecteplase (TNK) | Genentech, San Francisco | NDC50242-120-47 | thrombolysis |
| Ear tag | RapID Lab, San Francisco, CA | RapID Tags |