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TOPICAL COLLECTIONS

Methods in Adeno-Associated Viral (AAV) Vector Development and Characterization

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Amanda Dudek

Amanda Dudek

Stanford University

Dr. Amanda M. Dudek is currently a post-doctoral fellow at Stanford University. She holds a B.S. in Microbiology from Colorado State University and a PhD in Virology from Harvard University. Her early work included the use of adenoviral vectors to study neuronal AMPA receptor and chaperone protein biology, leading to an interest in viral vectors. Her primary dissertation work studied mechanisms of Adeno-associated virus (AAV) vector cell entry pathways used by diverse AAV capsids, including identification of a subset of capsids which use a non-canonical entry pathway independent of the AAV receptor AAVR. She additionally identified the second known highly conserved protein required for cellular entry both in vitro and in vivo, GPR108, by CRISPR screen. Her current work focuses on using AAV as a DNA donor for homology directed repair in primary human hematopoietic cells for development of gene editing-based therapies against viral infections, as well as characterization of cellular responses following AAV vector transduction.

Collection Overview

Adeno-associated viral (AAV) vectors are both a powerful pre-clinical research tool as well as a highly successful clinical gene therapy vehicle. AAV vectors are derived from a small single-stranded DNA virus in the Dependoparvovirus subfamily. The therapeutic gene and regulatory elements are inserted into the vector genome between flanking Inverted Terminal Repeat (ITR) sequences, while replication and structural proteins are provided in trans during the vector production process. High titer production from either mammalian or insect cell lines followed by purification to remove cellular contaminants and vectors lacking complete genome incorporation is imperative in order for successful and reproducible translation of gene therapies on both research and clinical scale. Characterization of vector properties as well as development of in vivo gene therapy models for determining vector efficacy are paramount for development of new therapies.

It is the goal of this Methods Collection to openly share methods in AAV biology and gene therapy development to improve the speed and ease at which the field is able to develop novel life-saving gene therapies. In this collection, we will highlight aspects of AAV-based gene therapy research including vector production and purification, methods of particle characterization, basic AAV biology, and methods in gene therapy model development.

Articles

Isolation of Next-Generation Gene Therapy Vectors through Engineering, Barcoding, and Screening of Adeno-Associated Virus (AAV) Capsid Variants
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Isolation of Next-Generation Gene Therapy Vectors through Engineering, Barcoding, and Screening of Adeno-Associated Virus (AAV) Capsid Variants

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Cited by 2

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2022

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Abstracts

Accessible recombinant AAV vector production and transduction of cultured cells

Anna Maurer*1

1UC Berkeley

High-yield production and purification of adeno-associated virus for in vivo applications

Kathryn Harris*1,

Oleksandr Kondratov1,

Sergei Zolotukhin1

1University of Florida