Automated Microscopy

Automated microscopy is the use of motorized instruments and software to acquire, process, and analyze images with limited manual control. In biological research, automated systems coordinate the microscope stage, illumination, focus, camera, and image-analysis algorithms to capture standardized fields or time-lapse sequences, often using autofocus and computational segmentation to identify cells or structures. This approach enables high-throughput screening, quantitative cell biology, developmental studies, and monitoring of dynamic processes such as cell division or migration. By improving reproducibility and reducing observer bias, automated microscopy helps researchers measure biological phenotypes across large datasets and supports more efficient, data-driven experimentation.

Automated Microscopy - Related Videos

Research

JoVE Journal - Biochemistry
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Cryo-Electron Microscopy Screening Automation Across Multiple Grids Using Smart Leginon

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Cited by 3 •

2023

Cryo-electron microscopy (cryoEM) multi-grid screening is often a tedious process that demands hours of attention. This protocol shows how to set up a standard Leginon collection and Smart Leginon Autoscreen to automate this process. This protocol can be applied to the majority of cryoEM holey foil grids.

Research

JoVE Journal - Biology
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Open Source High Content Analysis Utilizing Automated Fluorescence Lifetime Imaging Microscopy

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Cited by 14 •

2017

We present an open source high content analysis (HCA) instrument utilizing automated fluorescence lifetime imaging (FLIM) for assaying protein interactions using Förster resonance energy transfer (FRET) based readouts. Data acquisition for this openFLIM-HCA instrument is controlled by software written in µManager and data analysis is undertaken in FLIMfit.

Research

JoVE Journal - Biochemistry

Automated Acoustic Dispensing for the Serial Dilution of Peptide Agonists in Potency Determination Assays

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Cited by 1 •

2016

Peptide adsorption to plasticware during traditional tip-based serial dilutions can significantly impact potency determination and confound the understanding of structure-activity relationships used for lead identification and lead optimization phases of drug discovery. Here methods for automated acoustic non-contact serial dilution of peptide samples are described.

Live Cell Imaging of Bacillus subtilis and Streptococcus pneumoniae using Automated Time-lapse Microscopy

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Cited by 157 •

2011

This protocol provides a step-by-step procedure to monitor single cell behavior of different bacteria in time using automated fluorescence time-lapse microscopy. Furthermore, we provide guidelines how to analyze the microscopy images.

Drosophila Embryo Preparation and Microinjection for Live Cell Microscopy Performed using an Automated High Content Analyzer

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Cited by 2 •

2021

Presented here is a protocol to microinject and simultaneously image multiple Drosophila embryos during embryonic development using a plate-based, high content imager.

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