Computational Analysis

Computational analysis is the use of algorithms, statistical methods, and computer models to examine complex data and generate evidence-based conclusions. In biology, it processes information such as DNA sequences, gene-expression profiles, protein structures, and imaging data by identifying patterns, measuring relationships, and simulating biological processes under defined conditions. These approaches support genome annotation, disease classification, evolutionary studies, and prediction of molecular or cellular behavior, often revealing trends that are difficult to detect through observation alone. By integrating large datasets with experimental findings, computational analysis helps researchers formulate hypotheses, interpret results, and guide efficient laboratory investigations.

Computational Analysis - Related Videos

Research

JoVE Journal - Environment

Tree Core Analysis with X-ray Computed Tomography

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Cited by 10 •

2023

Here we show how to process tree cores with an X-ray computed tomography toolchain. Except for chemical extraction for some purposes, no further physical lab treatment is needed. The toolchain can be used for biomass estimations, for obtaining MXD/tree-ring width data as well as for obtaining quantitative wood anatomy data.

Research

JoVE Journal - Genetics
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Immunostaining for DNA Modifications: Computational Analysis of Confocal Images

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Cited by 8 •

2017

Newly discovered oxidized forms of 5-methylcytosine (oxi-mCs), 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC) and 5-carboxylcytosine (5caC) may represent distinct DNA modifications with unique functional roles. Here a semi-quantitative workflow for visualization of oxi-mCs' spatial distribution, signal intensity profiling and colocalization is described.

Extracting Metrics for Three-dimensional Root Systems: Volume and Surface Analysis from In-soil X-ray Computed Tomography Data

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Cited by 2 •

2016

A methodology for obtaining visual and quantitative root structure information from X-ray computed tomography data acquired in-soil is presented.

Computational Reconstruction of Pancreatic Islets as a Tool for Structural and Functional Analysis

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Cited by 6 •

2022

In this protocol, the pancreatic islets are reconstructed and analyzed using computational algorithms implemented in a dedicated multiplatform application.

A Magnetic Resonance Imaging-based Computational Protocol for Analysis of Plaque Morphology and Hemodynamics in Patients with Carotid Artery Stenosis

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Cited by 1 •

2025

Assessment of internal carotid artery (ICA) stenosis is based on the estimation of percentage stenosis, which does not account for physiologically relevant risk factors for stroke such as plaque composition and hemodynamics. This protocol leverages quantitative magnetic resonance imaging and computational fluid dynamics to characterize ICA plaque composition and hemodynamics.

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