Colonization Quantification

Colonization quantification is the measurement of microorganisms that establish and persist on or within a host, providing a standardized way to assess microbial burden in immunology and infection research. It typically involves collecting samples from defined anatomical sites or experimental tissues, recovering microbes by culture or molecular detection, and expressing abundance as colony-forming units, genome copies, or normalized signal per sample, tissue mass, or host. These measurements reveal how efficiently pathogens or commensals colonize, how immune responses and interventions alter persistence, and whether changes in microbial burden correlate with disease severity, transmission potential, or treatment efficacy.

Colonization Quantification - Related Videos

Research

JoVE Journal - Developmental Biology

Quantification of Colonic Stem Cell Mutations

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Cited by 1 •

2015

We report significant improvements for the reproducible measurement of somatic colonic stem cell mutations after exposure of mice to potential DNA damaging agents.

Quantification of Fungal Colonization, Sporogenesis, and Production of Mycotoxins Using Kernel Bioassays

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Cited by 39 •

2012

The devastation of cereal crops by seed-infecting fungi has prompted numerous research efforts to better understand plant-pathogen interactions. To study seed-fungal interactions in a laboratory setting, we developed a robust method for the quantification of fungal reproduction, biomass, and mycotoxin contamination using kernel bioassays.

Electrophysiological Recording from Colonic Afferent Nerves in an Ex Vivo Rat Colon

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2025

This video demonstrates a method to record the activity of colonic afferent nerves in an ex-vivo rat colon, cannulated at both ends and infused with saline to increase intraluminal pressure. As pressure increases, the nerve signal rises, indicating its stimulation.

A Murine Model of Group B Streptococcus Vaginal Colonization

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Cited by 64 •

2016

The purpose of this protocol is to imitate human group B Streptococcus (GBS) vaginal colonization in a murine model. This method may be used to investigate host immune responses and bacterial factors contributing to GBS vaginal persistence, as well as to test therapeutic strategies.

Detection of Enterohemorrhagic Escherichia Coli Colonization in Murine Host by Non-invasive In Vivo Bioluminescence System

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Cited by 1 •

2018

A detailed protocol of a mouse model for enterohemorrhagic E. coli (EHEC) colonization by using bioluminescence-labeled bacteria is presented. The detection of these bioluminescent bacteria by a non-invasive in vivo imaging system in live animals can advance our current understanding of EHEC colonization.

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